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crosshap: Local Haplotype Clustering and Visualization
A local haplotyping visualization toolbox to capture major patterns of co-inheritance between clusters of linked variants, whilst connecting findings to phenotypic and demographic traits across individuals. 'crosshap' enables users to explore and understand genomic variation across a trait-associated region. For an example of successful local haplotype analysis, see Marsh et al. (2022) <doi:10.1007/s00122-022-04045-8>.
Getting started
Browse package contents
Package details |
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| Author | Jacob Marsh [aut, cre] (<https://orcid.org/0000-0003-3734-2023>), Brady Johnston [aut] (<https://orcid.org/0000-0001-6301-2269>), Jakob Petereit [aut] (<https://orcid.org/0000-0003-2159-0380>) |
| Maintainer | Jacob Marsh <jake.marsh@live.com.au> |
| License | MIT + file LICENSE |
| Version | 1.4.0 |
| URL | https://jacobimarsh.github.io/crosshap/ |
| Package repository | View on CRAN |
| Installation |
Install the latest version of this package by entering the following in R:
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