build_right_clusterplot: Right intra-cluster linkage plot

In crosshap: Local Haplotype Clustering and Visualization

Right intra-cluster linkage plot

Description

build_right_jitterplot() builds a horizontal plot displaying the mean pairwise R^2 linkage between each SNP and all other SNPs in its marker group, grouped by marker group, coloured by alternate allele frequency. Makes use of the $Varfile information from haplotyping object. It is an internal function called by crosshap_viz(), though can be called separately to build a stand-alone plot.

Usage

build_right_clusterplot(HapObject, epsilon, hide_labels = FALSE)

Arguments

HapObject	Haplotype object created by run_haplotyping().
epsilon	Epsilon to visualize haplotyping results for.
hide_labels	If TRUE, legend is hidden.

Value

A ggplot2 object.

Examples

build_right_clusterplot(HapObject, epsilon = 0.6, hide_labels = FALSE)

crosshap documentation built on May 29, 2024, 1:13 a.m.