build_mid_dotplot: Middle MG/hap dot plot

In crosshap: Local Haplotype Clustering and Visualization

Middle MG/hap dot plot

Description

build_mid_dotplot() builds a central dot plot displaying the relationship between haplotype combinations and the characteristic marker group alleles that define them. Makes use of the $Hapfile information from a haplotype object. This is an internal function called by crosshap_viz(), though can be called separately to build a stand-alone plot (can be useful when patched to a peripheral plot).

Usage

build_mid_dotplot(HapObject, epsilon, hide_labels = FALSE)

Arguments

HapObject	Haplotype object created by run_haplotyping
epsilon	Epsilon to visualize haplotyping results for.
hide_labels	If TRUE, legend is hidden.

Value

A ggplot2 object.

Examples

build_mid_dotplot(HapObject, epsilon = 0.6, hide_labels = FALSE)

crosshap documentation built on May 29, 2024, 1:13 a.m.