HapObject: Example Haplotype object
In crosshap: Local Haplotype Clustering and Visualization
HapObject R Documentation
Example Haplotype object
Description
A haplotyping object created by run_haplotyping() for example cqProt-003 soy data
Usage
HapObject
Format
A haplotype (S3) object containing results needed for haplotype visualization across five epsilon values (0.2,0.4,0.6,0.8,1)
- epsilon
Epsilon value chosen for haplotyping with DBSCAN
- MGmin
MGmin value (minPts) chosen for haplotyping with DBSCAN
- Hapfile
Summary of Marker Groups defining haplotype combinations
- Indfile
Haplotype assignments for individuals
- Varfile
Marker Group assignments for SNPs, with additional calculated information
crosshap documentation built on May 29, 2024, 1:13 a.m.
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| HapObject | R Documentation |
Example Haplotype object
Description
A haplotyping object created by run_haplotyping() for example cqProt-003 soy data
Usage
HapObject
Format
A haplotype (S3) object containing results needed for haplotype visualization across five epsilon values (0.2,0.4,0.6,0.8,1)
- epsilon
Epsilon value chosen for haplotyping with DBSCAN
- MGmin
MGmin value (minPts) chosen for haplotyping with DBSCAN
- Hapfile
Summary of Marker Groups defining haplotype combinations
- Indfile
Haplotype assignments for individuals
- Varfile
Marker Group assignments for SNPs, with additional calculated information
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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