clustree_viz: Clustering tree
In crosshap: Local Haplotype Clustering and Visualization
clustree_viz R Documentation
Clustering tree
Description
clustree_viz() builds a clustering tree displaying changes in haplotype
assignment between individuals or changes in Marker Group assignment for
SNPs, across different epsilon values. This function is a 'clustree' wrapper.
Usage
clustree_viz(HapObject, type = "MG")
Arguments
HapObject
A haplotyping object with a range of results from different
epsilons created by run_haplotyping()
type
When type = "hap", nodes represent haplotype populations, when
type = "MG", nodes represent marker groups.
Value
A ggplot2 object.
crosshap documentation built on May 29, 2024, 1:13 a.m.
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| clustree_viz | R Documentation |
Clustering tree
Description
clustree_viz() builds a clustering tree displaying changes in haplotype assignment between individuals or changes in Marker Group assignment for SNPs, across different epsilon values. This function is a 'clustree' wrapper.
Usage
clustree_viz(HapObject, type = "MG")
Arguments
HapObject |
A haplotyping object with a range of results from different epsilons created by run_haplotyping() |
type |
When type = "hap", nodes represent haplotype populations, when type = "MG", nodes represent marker groups. |
Value
A ggplot2 object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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