build_right_phenoplot: Right SNP-pheno phenoplot

In crosshap: Local Haplotype Clustering and Visualization

Right SNP-pheno phenoplot

Description

build_right_phenoplot() builds a horizontal plot displaying the mean difference in phenotype score between individuals with the alternate vs reference alleles for each SNP locus, grouped by marker group, coloured by the alternate allele frequency of each SNP. Makes use of the $Varfile phenotypic information from haplotyping object. It is an internal function called by crosshap_viz(), though can be called separately to build a stand-alone plot.

Usage

build_right_phenoplot(HapObject, epsilon, hide_labels = TRUE)

Arguments

HapObject	Haplotype object created by run_haplotyping().
epsilon	Epsilon to visualize haplotyping results for.
hide_labels	If TRUE, legend is hidden.

Value

A ggplot2 object.

Examples

    build_right_phenoplot(HapObject, epsilon = 0.6, hide_labels = FALSE)

crosshap documentation built on May 29, 2024, 1:13 a.m.