build_left_posplot: Left SNP-position plot

In crosshap: Local Haplotype Clustering and Visualization

Left SNP-position plot

Description

build_left_alleleplot() builds a horizontal plot displaying the chromosomal position of each SNP locus, grouped by marker group. Makes use of the $Varfile file from haplotype object. It is an internal function called by crosshap_viz(), though can be called separately to build a stand-alone plot.

Usage

build_left_posplot(HapObject, epsilon, hide_labels = TRUE)

Arguments

HapObject	Haplotype object created by run_haplotyping().
epsilon	Epsilon matching the haplotype object used for umap_in.
hide_labels	If TRUE, legend is hidden.

Value

A ggplot2 object.

Examples

build_left_posplot(HapObject, epsilon = 0.6, hide_labels = FALSE)

crosshap documentation built on May 29, 2024, 1:13 a.m.