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cxr: A Toolbox for Modelling Species Coexistence in R
Recent developments in modern coexistence theory have advanced our understanding on how species are able to persist and co-occur with other species at varying abundances. However, applying this mathematical framework to empirical data is still challenging, precluding a larger adoption of the theoretical tools developed by empiricists. This package provides a complete toolbox for modelling interaction effects between species, and calculate fitness and niche differences. The functions are flexible, may accept covariates, and different fitting algorithms can be used. A full description of the underlying methods is available in García-Callejas, D., Godoy, O., and Bartomeus, I. (2020) <doi:10.1111/2041-210X.13443>. Furthermore, the package provides a series of functions to calculate dynamics for stage-structured populations across sites.
Getting started
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Package details |
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| Author | David Garcia-Callejas [aut, cre] (<https://orcid.org/0000-0001-6982-476X>), Ignasi Bartomeus [aut] (<https://orcid.org/0000-0001-7893-4389>), Oscar Godoy [aut] (<https://orcid.org/0000-0003-4988-6626>), Maxime Lancelot [ctb], Maria Paniw [ctb] |
| Maintainer | David Garcia-Callejas <david.garcia.callejas@gmail.com> |
| License | MIT + file LICENSE |
| Version | 1.1.1 |
| URL | https://github.com/RadicalCommEcol/cxr |
| Package repository | View on CRAN |
| Installation |
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