BH_pm_alpha_pairwise_lambdacov_none_alphacov_none: Beverton-Holt model with pairwise alphas and no covariate...
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View source: R/BH_pm_alpha_pairwise_lambdacov_none_alphacov_none.R

BH_pm_alpha_pairwise_lambdacov_none_alphacov_none

R Documentation

Beverton-Holt model with pairwise alphas and no covariate effects

Description

Beverton-Holt model with pairwise alphas and no covariate effects

Usage

BH_pm_alpha_pairwise_lambdacov_none_alphacov_none(
  par,
  fitness,
  neigh_intra_matrix = NULL,
  neigh_inter_matrix,
  covariates,
  fixed_parameters
)

Arguments

`par`	1d vector of initial parameters: 'lambda', 'alpha_intra' (optional), 'alpha_inter', and 'sigma'
`fitness`	1d vector of fitness observations, in log scale
`neigh_intra_matrix`	optional matrix of one column, number of intraspecific neighbours for each observation
`neigh_inter_matrix`	matrix of arbitrary columns, number of interspecific neighbours for each observation
`covariates`	included for compatibility, not used in this model
`fixed_parameters`	optional list specifying values of fixed parameters, with components "lambda","alpha_intra","alpha_inter".