acc_distributions_only: Plots and checks for distributions - only
In dataquieR: Data Quality in Epidemiological Research

acc_distributions_only

R Documentation

Plots and checks for distributions – only

Descriptor

acc_distributions_only(
  resp_vars = NULL,
  study_data,
  meta_data,
  label_col,
  flip_mode = "noflip"
)

`resp_vars`	variable list the names of the measurement variables
`study_data`	data.frame the data frame that contains the measurements
`meta_data`	data.frame the data frame that contains metadata attributes of study data
`label_col`	variable attribute the name of the column in the metadata with labels of variables
`flip_mode`	enum default \| flip \| noflip \| auto. Should the plot be in default orientation, flipped, not flipped or auto-flipped. Not all options are always supported. In general, this con be controlled by setting the `roptions(dataquieR.flip_mode = ...)`. If called from `dq_report`, you can also pass `flip_mode` to all function calls or set them specifically using `specific_args`.

A list with:

SummaryTable: data.frame containing data quality checks for "Unexpected location" (FLG_acc_ud_loc) and "Unexpected proportion" (FLG_acc_ud_prop) for each response variable in resp_vars.
SummaryData: a data.frame containing data quality checks for "Unexpected location" and / or "Unexpected proportion" for a report
SummaryPlotList: list of ggplots for each response variable in resp_vars.

If no response variable is defined, select all variables of type float or integer in the study data.
Remove missing codes from the study data (if defined in the metadata).
Remove measurements deviating from (hard) limits defined in the metadata (if defined).
Exclude variables containing only NA or only one unique value (excluding NAs).
Perform check for "Unexpected location" if defined in the metadata (needs a LOCATION_METRIC (mean or median) and LOCATION_RANGE (range of expected values for the mean and median, respectively)).
Perform check for "Unexpected proportion" if defined in the metadata (needs PROPORTION_RANGE (range of expected values for the proportions of the categories)).
Plot histogram(s).
If group_vars is specified by the user, distributions within group-wise ecdf are presented.