shape.fd.analysis: Diagnostic Plot for First and Second Order Integrated and...

In ddalpha: Depth-Based Classification and Calculation of Data Depth

Diagnostic Plot for First and Second Order Integrated and Infimal Depths

Description

Produce the diagnostic plot based on the fist or second order extended integrated / infimal depths.

Usage

shape.fd.analysis(datafA, datafB, range = NULL, d = 101, order = 1,
  method = c("halfspace", "simplicial"), approx = 0, title = "",
  nfun = 10, plot = TRUE)

Arguments

datafA	A single function whose depth is computed, represented by a dataf object of arguments and functional values.
datafB	Functional dataset with respect to which the depth of datafA is computed. datafB is represented by a dataf object of arguments and functional values. n stands for the number of functions. The grid of observation points for the functions in datafA and datafB may not be the same.
range	The common range of the domain where the functions datafA and datafB are observed. Vector of length 2 with the left and the right end of the interval. Must contain all arguments given in datafA and datafB.
d	Grid size to which all the functional data are transformed. For depth computation, all functional observations are first transformed into vectors of their functional values of length d corresponding to equi-spaced points in the domain given by the interval range. Functional values in these points are reconstructed using linear interpolation, and extrapolation.
order	The order of the depth to be used in the plot, for order=1 produces the plot of univariate marginal depth of A and nfun functions from B over the domain of the functions. For order=2 produces the bivariate contour plot of the bivariate depths of A at couples of points from the domain.
method	The depth that is used in the diagnostic plot. possible values are halfspace for the halfspace depth, or simplicial for the simplicial depth.
approx	For order=2, the number of approximations used in the computation of the order extended depth. By default this is set to 0, meaning that the depth is computed at all possible d^2 combinations of the points in the domain. When set to a positive integer, approx bivariate points are randomly sampled in unit square, and at these points the bivariate depths of the corresponding functional values are computed.
title	The title of the diagnostic plot.
nfun	For order=1, the number of functions from B whose coordinate-wise univariate depths of functional values should be displayed with the depth of A. The depth of A is displayed in solid red line, the depths of the functions from B in dashed black.
plot	Logical: should the function by plotted?

Details

Plots a diagnostic plot of pointwise univariate (or bivariate) depths for all possible points (or couples of points) from the domain of the functional data. From such a plot it is possible to infer into the first order (or second order) properties of a single function x with respect to the given set of functional data. For order=1, the integral of the displayed function is the integrated depth of x, the smallest value of the function is the infimal depth of x. For order=2, the bivariate integral of the displayed surface gives the second order extended integrated depth of x, the infimum of this bivariate function gives the second order infimal depth of x. For details see Nagy et al. (2016) and depthf.fd1.

Value

For order=1 two depth values, and two vectors of pointwise depths:

• Simpl_FD the first order integrated depth based on the simplicial depth,

• Half_FD the first order integrated depth based on the halfspace depth,

• Simpl_ID the first order infimal depth based on the simplicial depth,

• Half_ID the first order infimal depth based on the halfspace depth,

• PSD the vector of length d containing the computed pointwise univariate simplicial depths used for the computation of Simpl_FD and Simpl_ID,

• PHD the vector of length d containing the computed pointwise univariate halfspace depths used for the computation of Half_FD and Half_ID.

In addition, the first order integrated / infimal depth diagnostic plot of the function A with respect to the random sample given by the functions corresponding to the rows of the matrix B is produced.

For order=2 four depth values, and two matrices of pointwise depths:

• Simpl_FD the second order integrated depth based on the simplicial depth,

• Half_FD the second order integrated depth based on the halfspace depth,

• Simpl_ID the second order infimal depth based on the simplicial depth,

• Half_ID the second order infimal depth based on the halfspace depth,

• PSD the matrix of size d*d containing the computed pointwise bivariate simplicial depths used for the computation of Simpl_FD and Simpl_ID,

• PHD the matrix of size d*d containing the computed pointwise bivariate halfspace depths used for the computation of Half_FD and Half_ID.

In addition, the second order integrated / infimal depth diagnostic plot of the function A with respect to the random sample given by the functions corresponding to the rows of the matrix B is produced.

Author(s)

Stanislav Nagy, [e-mail]

References

Nagy, S., Gijbels, I. and Hlubinka, D. (2017). Depth-based recognition of shape outlying functions. Journal of Computational and Graphical Statistics, 26 (4), 883–893.

See Also

depthf.fd1

Examples

datafA = dataf.population()$dataf[1]
dataf = dataf.population()$dataf[2:20]
shape.fd.analysis(datafA,dataf,order=1)
shape.fd.analysis(datafA,dataf,order=2,approx=0)

ddalpha documentation built on Oct. 1, 2024, 1:07 a.m.