adj_seq: Adjust the DNA sequence based on the ntPHMM path
In debar: A Post-Clustering Denoiser for COI-5P Barcode Data
Description
Usage
Arguments
Value
Description
Adjust the DNA sequence based on the ntPHMM path
Usage
1
adj_seq(frame_dat, path_out, censor_length = 3, added_phred = "*")
Arguments
frame_dat
The DNAseq's framing data - generated by set_frame()
path_out
The nucleotide PHMM path for the sequence.
censor_length
number of base pairs in either direction of a PHMM correction
to convert to placeholder characters.
added_phred
The phred character to use for characters inserted into the original sequence.
Value
a named list.
debar documentation built on Jan. 11, 2020, 9:31 a.m.
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Description Usage Arguments Value
Description
Adjust the DNA sequence based on the ntPHMM path
Usage
1 | adj_seq(frame_dat, path_out, censor_length = 3, added_phred = "*")
|
Arguments
frame_dat |
The DNAseq's framing data - generated by set_frame() |
path_out |
The nucleotide PHMM path for the sequence. |
censor_length |
number of base pairs in either direction of a PHMM correction to convert to placeholder characters. |
added_phred |
The phred character to use for characters inserted into the original sequence. |
Value
a named list.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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