Files in debar
A Post-Clustering Denoiser for COI-5P Barcode Data
MD5
README.md
NAMESPACE
DESCRIPTION
build/vignette.rds
R/consensus_seq.r
R/io.r
R/adjust_seq.r
R/frame_seq.r
R/sysdata.rda
R/translation.r
R/print.r
R/outseq.r
R/aa_check.r
R/DNAseq.r
R/debar.r
R/pipeline.r
R/phmms.r
vignettes/debar-algorithm-details.Rmd
vignettes/debar-vignette.Rmd
man/triple_ins.Rd
man/consensus.Rd
man/individual_DNAbin.Rd
man/aa_check.Rd
man/set_frame.Rd
man/DNAseq.Rd
man/translate_codon.Rd
man/read_fastq.Rd
man/nt_PHMM.Rd
man/ex_nt_list.Rd
man/new_DNAseq.Rd
man/write_fastq.Rd
man/validate_DNAseq.Rd
man/meta_check.Rd
man/debar.Rd
man/outseq.Rd
man/adjust.Rd
man/col_mode.Rd
man/example_nt_string.Rd
man/ins_front_trim.Rd
man/dir_check.Rd
man/print.DNAseq.Rd
man/triple_dels.Rd
man/read_fasta.Rd
man/adj_seq.Rd
man/example_nt_string_errors.Rd
man/denoise_file.Rd
man/rev_comp.Rd
man/write_fasta.Rd
man/denoise_list.Rd
man/censored_translation.Rd
man/leading_ins.Rd
man/frame.Rd
man/write_wrapper.Rd
man/denoise.Rd
tests/testthat.R
tests/testthat/test_messy_data.r
tests/testthat/test_bad_calls.r
tests/testthat/test_adjust_seq.r
tests/testthat/test_consensus.r
tests/testthat/test_file_to_file.r
tests/testthat/test_arguments.r
tests/testthat/test_phred.r
tests/testthat/test_aa_check.r
tests/testthat/test_print.r
tests/testthat/test_examples.r
tests/testthat/test_io.r
tests/testthat/test_list.r
inst/doc/debar-algorithm-details.html
inst/doc/debar-vignette.R
inst/doc/debar-vignette.html
inst/doc/debar-algorithm-details.Rmd
inst/doc/debar-algorithm-details.R
inst/doc/debar-vignette.Rmd
inst/extdata/small_unittest.fasta
inst/extdata/coi_sequel_data_subset.fastq.gz
inst/extdata/small_unittest.fastq
inst/extdata/coi_sequel_data_subset.fastq
inst/extdata/coi_sequel_data_subset.fasta
