write_fasta: Output the denoised consensus sequence to a fasta file.

Description Usage Arguments Value See Also

View source: R/io.r

Description

Output the denoised consensus sequence to a fasta file.

Usage

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write_fasta(x, ...)

## S3 method for class 'DNAseq'
write_fasta(x, ..., outfile = "denoised.fasta",
  append = TRUE)

Arguments

x

a DNAseq class object.

...

additional arguments to be passed between methods.

outfile

The name of the file to output the data to. Default is "denoised.fasta".

append

Should the ccs consensus sequence be appended to the output file?(TRUE) Or overwrite the file?(FALSE) Default is TRUE.

Value

a class object of code"DNAseq"

See Also

DNAseq

frame

adjust


debar documentation built on Jan. 11, 2020, 9:31 a.m.