write_fasta: Output the denoised consensus sequence to a fasta file.

In debar: A Post-Clustering Denoiser for COI-5P Barcode Data

Output the denoised consensus sequence to a fasta file.

Description

Output the denoised consensus sequence to a fasta file.

Usage

write_fasta(x, ...)

## S3 method for class 'DNAseq'
write_fasta(x, ..., outfile = "denoised.fasta",
  append = TRUE)

Arguments

x	a DNAseq class object.
...	additional arguments to be passed between methods.
outfile	The name of the file to output the data to. Default is "denoised.fasta".
append	Should the ccs consensus sequence be appended to the output file?(TRUE) Or overwrite the file?(FALSE) Default is TRUE.

Value

a class object of code "DNAseq"

See Also

DNAseq

frame

adjust

debar documentation built on May 29, 2024, 2:02 a.m.