write_wrapper: A wrapper function to deploy the fastq and fata output...

In debar: A Post-Clustering Denoiser for COI-5P Barcode Data

Description

A wrapper function to deploy the fastq and fata output functions.

Usage

write_wrapper(x, ...)

## S3 method for class 'DNAseq'
write_wrapper(x, ..., outfile = "denoised.fastq",
  outformat = "fastq", append = TRUE, keep_phred = TRUE,
  phred_placeholder = "#")

Arguments

x	a DNAseq class object.
...	additional arguments to be passed between methods.
outfile	The name of the file to output the data to. Default is "denoised.fasta".
outformat	The format of the output data, either fasta for fastq. Default is fastq.
append	Should the ccs consensus sequence be appended to the output file?(TRUE) Or overwrite the file?(FALSE) Default is TRUE.
keep_phred	Should the original PHRED scores be kept in the output? Default is TRUE.
phred_placeholder	The character to input for the phred score line. Default is '#'.

Value

a class object of code"DNAseq"

debar documentation built on Jan. 11, 2020, 9:31 a.m.