Read in raw data from a fastq file.
The name of the fastq file to read data from.
Boolean indicating if the Phred quality scores should be retained in the output dataframe. Default is TRUE.
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#read in an unzipped fastq file fastq_example_file = system.file('extdata/coi_sequel_data_subset.fastq', package = 'debar') data = read_fastq(fastq_example_file) #read in a gzipped fastq file and do not keep the phred scores gz_fastq_example_file = system.file('extdata/coi_sequel_data_subset.fastq', package = 'debar') data2 = read_fastq(gz_fastq_example_file, keep_quality = FALSE)
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