censored_translation: Censored Translation of a DNA string.
In debar: A Post-Clustering Denoiser for COI-5P Barcode Data
Description
Usage
Arguments
See Also
Description
Translate a DNA sequence using the censored translation table,
this translates codons for which the amino acids is unambigious across
mitochondrial genetic codes across the animal kingdom and does not
translate those for which the amino acid varies,
but rather outputs a ? in the string.
Usage
1
censored_translation(dna_str, reading_frame = 1)
Arguments
dna_str
The DNA string to be translated.
reading_frame
reading frame = 1 means the first bp in the string is the start of the
first codon, can pass 1, 2 or 3. For 2 and 3 the first 1 and 2 bp will be
dropped from translation respectively.
See Also
debar documentation built on Jan. 11, 2020, 9:31 a.m.
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Description Usage Arguments See Also
Description
Translate a DNA sequence using the censored translation table, this translates codons for which the amino acids is unambigious across mitochondrial genetic codes across the animal kingdom and does not translate those for which the amino acid varies, but rather outputs a ? in the string.
Usage
1 | censored_translation(dna_str, reading_frame = 1)
|
Arguments
dna_str |
The DNA string to be translated. |
reading_frame |
reading frame = 1 means the first bp in the string is the start of the first codon, can pass 1, 2 or 3. For 2 and 3 the first 1 and 2 bp will be dropped from translation respectively. |
See Also
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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