censored_translation: Censored Translation of a DNA string.

In debar: A Post-Clustering Denoiser for COI-5P Barcode Data

Censored Translation of a DNA string.

Description

Translate a DNA sequence using the censored translation table, this translates codons for which the amino acids is unambigious across mitochondrial genetic codes across the animal kingdom and does not translate those for which the amino acid varies, but rather outputs a ? in the string.

Usage

censored_translation(dna_str, reading_frame = 1)

Arguments

dna_str	The DNA string to be translated.
reading_frame	reading frame = 1 means the first bp in the string is the start of the first codon, can pass 1, 2 or 3. For 2 and 3 the first 1 and 2 bp will be dropped from translation respectively.

See Also

aa_check

debar documentation built on May 29, 2024, 2:02 a.m.