R/data.R

In demic: Dynamic Estimator of Microbial Communities

#' Contig Cluster 1
#'
#' Data associated with DEMIC paper (on SourceForge)
#'
#' @format ## `ContigCluster1`
#' A data frame with 120,897 rows and 5 columns:
#' \describe{
#'   \item{log_cov}{Log Coverage for Sliding Windows over Contigs}
#'   \item{GC_content}{GC Content for Sliding Windows over Contigs}
#'   \item{sample}{Sample Name}
#'   \item{contig}{Contig Name}
#'   \item{length}{Length of Contig}
#' }
#' @source <https://sourceforge.net/projects/demic/files/>
"ContigCluster1"

#' Contig Cluster 2
#'
#' Data associated with DEMIC paper (on SourceForge)
#'
#' @format ## `ContigCluster2`
#' A data frame with 66,735 rows and 5 columns:
#' \describe{
#'   \item{log_cov}{Log Coverage for Sliding Windows over Contigs}
#'   \item{GC_content}{GC Content for Sliding Windows over Contigs}
#'   \item{sample}{Sample Name}
#'   \item{contig}{Contig Name}
#'   \item{length}{Length of Contig}
#' }
#' @source <https://sourceforge.net/projects/demic/files/>
"ContigCluster2"

#' MaxBin2 Cluster 001
#'
#' Generated by PyCov3 on simulated test data
#'
#' @format ## `max_bin_001`
#' A data frame with 79,740 rows and 5 columns:
#' \describe{
#'   \item{log_cov}{Log Coverage for Sliding Windows over Contigs}
#'   \item{GC_content}{GC Content for Sliding Windows over Contigs}
#'   \item{sample}{Sample Name}
#'   \item{contig}{Contig Name}
#'   \item{length}{Length of Contig}
#' }
#' @source <https://sourceforge.net/projects/demic/files/>
"max_bin_001"

#' MaxBin2 Cluster 002
#'
#' Generated by PyCov3 on simulated test data
#'
#' @format ## `max_bin_002`
#' A data frame with 148,638 rows and 5 columns:
#' \describe{
#'   \item{log_cov}{Log Coverage for Sliding Windows over Contigs}
#'   \item{GC_content}{GC Content for Sliding Windows over Contigs}
#'   \item{sample}{Sample Name}
#'   \item{contig}{Contig Name}
#'   \item{length}{Length of Contig}
#' }
#' @source <https://sourceforge.net/projects/demic/files/>
"max_bin_002"

#' MaxBin2 Cluster 003
#'
#' Generated by PyCov3 on simulated test data
#'
#' @format ## `max_bin_003`
#' A data frame with 124,578 rows and 5 columns:
#' \describe{
#'   \item{log_cov}{Log Coverage for Sliding Windows over Contigs}
#'   \item{GC_content}{GC Content for Sliding Windows over Contigs}
#'   \item{sample}{Sample Name}
#'   \item{contig}{Contig Name}
#'   \item{length}{Length of Contig}
#' }
#' @source <https://sourceforge.net/projects/demic/files/>
"max_bin_003"