diem: Debris-Containing Droplet Identification using EM

Identification of debris-containing droplets from a droplet-based single cell/nucleus RNA-seq. 'diem' uses the expression profile of background RNA droplets, followed by expectation maximization (EM), to assign candidates as debris or nuclei. See Alvarez M, Rahmani E, et al (2019) <doi:10.1101/786285> for details.

Package details

AuthorMarcus Alvarez [aut, cre], Elior Rahmani [aut]
MaintainerMarcus Alvarez <[email protected]>
LicenseGPL-3
Version1.0
URL https://www.biorxiv.org/content/10.1101/786285v2
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("diem")

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diem documentation built on Nov. 16, 2019, 1:08 a.m.