Description Usage Arguments Value Examples
Convert an SCE object to a Seurat object. if targets
is true (default), output only droplets that are
called as not debris. If meta
is TRUE, then output meta data from droplet_info to the meta.data
slot in the Seurat object. Additional functions ...
to this function are passed onto
CreateSeuratObject
. Common arguments include min.cells = 3
and
min.features = 200
.
1 | convert_to_seurat(x, targets = TRUE, meta = TRUE, ...)
|
x |
An SCE object. |
targets |
Logical indicating whether to remove droplets called as debris. Default is TRUE. |
meta |
Logical that indicates whether to place the data from droplet_info into meta.data in the resulting Seurat object. Default is TRUE. |
... |
Arguments to |
A Seurat object
1 2 3 4 5 | mm_seur <- convert_to_seurat(x = mb_small,
targets = FALSE,
min.features = 500,
min.cells = 3,
project = mb_small@name)
|
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