Description Usage Arguments Value
Call cells or nuclei from an SCE object. EM must be run beforehand. The posterior probability is defined as 1 - Prob(Debris), where Prob(Debris) is the posterior probability that a droplet is debris.
1 | call_targets(x, pp_thresh = 0.95, min_genes = 200)
|
x |
An SCE object. |
pp_thresh |
The minimum posterior probability of a droplet to be classified as a cell/nucleus. |
min_genes |
The minimum number of genes a droplet must have to be classified as a cell/nucleus. |
An SCE object.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.