Description Usage Arguments Value
This function sets the droplets that will be used for the
initialization. The cell types from clustering these droplets are used to
to intialize the parameters of the multinomal for the EM. The top
cluster_n
droplets ranked by either gene or count are fixed as
to the debris group.
1 2 | set_cluster_set(x, cluster_n = 1000, order_by = "gene",
verbose = FALSE)
|
x |
An SCE object. |
cluster_n |
Numeric value specifying the number of droplets to use
in the cluster set. The top |
order_by |
Whether to order the droplets by total number of total counts or total number of genes detected. |
verbose |
verbosity |
An SCE object.
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