Nothing
MCR_table
. The coordinates were converted to hg19 (from hg18)caret::predict.train
explicitcreate_SCNA_score_df()
where the SCNA score was not calculated because the column name for "MCR_overlap_percent" was incorrectly assigned as "transcript_overlap_percent"TCGA_MTL_fit
and specific_thresholds
after fixing the issue abovena.string
argument to create_noncoding_impact_score_df()
, predict_coding_impact()
and create_features_df()
as the string that was used to indicate when a score is not available during annotation with ANNOVAR (default = ".")determine_hotspot_genes()
to able to use occurrence annotations from different versions of COSMIC Initial release
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