epistasis: Detecting Epistatic Selection with Partially Observed Genotype Data

An efficient multi-core package to reconstruct an underlying network of genomic signatures of high-dimensional epistatic selection from partially observed genotype data. The phenotype that we consider is viability. The network captures the conditional dependent short- and long-range linkage disequilibrium structure of genomes and thus reveals aberrant marker-marker associations that are due to epistatic selection. We target on high-dimensional genotype data where number of variables (markers) is larger than number of sample sizes (p >> n). The computations is memory-optimized using the sparse matrix output.

Package details

AuthorPariya Behrouzi, Danny Arends and Ernst C. Wit
MaintainerPariya Behrouzi <[email protected]>
LicenseGPL-3
Version0.0.1-1
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("epistasis")

Try the epistasis package in your browser

Any scripts or data that you put into this service are public.

epistasis documentation built on May 29, 2017, 6:07 p.m.