plot.epi: plot for S3 class "epi"

In epistasis: Detecting Epistatic Selection with Partially Observed Genotype Data

Description

Plot the graph path which is the output of two functions epistasis.

Usage

## S3 method for class 'epi'
plot( x, n.markers=NULL , ... )

Arguments

x	An object from "epi" class.
n.markers	A vector containing number of variables/markers in each group/chromosome. For example, the CviCol dataset that is provided in the package contains 5 chromosomes/ groups which the total number of markers is p = 90, where the first 24 markers belong into chromosome 1, the next 14 markers into chromosome 2, ..., and chromosome 5 contains 19 markers. Thus, n.mrkr = c(24,14,17,16,19). If n.mrkr = NULL, in the graph visualization all markers are represented same colour.
...	System reserved (No specific usage)

Author(s)

Pariya Behrouzi and Ernst C. Wit
Maintainer: Pariya Behrouzi [e-mail]

References

P. Behrouzi and E. C. Wit. Detecting Epistatic Selection with Partially Observed Genotype Data Using Copula Graphical Models. arXiv, 2016.

See Also

epistasis.

epistasis documentation built on May 2, 2019, 5:09 a.m.