plot.episim: Plot function for 'S3' class '"episim"'

In epistasis: Detecting Epistatic Selection with Partially Observed Genotype Data

Description

Visualizes the pattern of the true graph, the adjacency matrix, precison matrix and the covariance matrix of the simulated data.

Usage

## S3 method for class 'episim'
plot(x, layout = layout.fruchterman.reingold, ...)

Arguments

x	An object of S3 class "episim", from function episim.
layout	The default is "layout.fruchterman.reingold".
...	System reserved (No specific usage)

Author(s)

Pariya Behrouzi and Ernst C. Wit
Maintainer: Pariya Behrouzi [e-mail]

References

P. Behrouzi and E. C. Wit. Detecting Epistatic Selection with Partially Observed Genotype Data Using Copula Graphical Models. arXiv, 2016.

See Also

episim

Examples

## Not run: 
# Generating discrete ordinal data with "genome-like" graph structure
data.sim <- episim(alpha = 0.01, beta = 0.02)
plot( data.sim )

## End(Not run)

epistasis documentation built on May 2, 2019, 5:09 a.m.