plot.episelect: Plot function for S3 class "episelect"

In epistasis: Detecting Epistatic Selection with Partially Observed Genotype Data

Description

Plot the optimal graph by model selection

Usage

## S3 method for class 'episelect'
plot(x, n.markers = NULL, vertex.size=NULL, vertex.label = FALSE, ...)

Arguments

x	An object with S3 class "episelect"
n.markers	A vector containing number of variables/markers in each group/chromosome. For example, the CviCol dataset that is provided in the package contains 5 chromosomes/ groups which the total number of markers is p = 90, where the first 24 markers belong into chromosome 1, the next 14 markers into chromosome 2, ..., and chromosome 5 contains 19 markers. Thus, n.mrkr = c(24,14,17,16,19). If n.mrkr = NULL, in the graph visualization all markers are represented same colour.
vertex.size	The size of vertices in the graph visualization. The default value is 7.
vertex.label	Assign names to the vertices. Default is FALSE.
...	System reserved (No specific usage)

Author(s)

Pariya Behrouzi and Ernst C. Wit
Maintainer: Pariya Behrouzi [e-mail]

References

P. Behrouzi and E. C. Wit. Detecting Epistatic Selection with Partially Observed Genotype Data Using Copula Graphical Models. arXiv, 2016.

See Also

episelect

epistasis documentation built on May 2, 2019, 5:09 a.m.