B73Ki11: A family from Nested Association Mapping (NAM) in maize
In epistasis: Detecting Epistatic Selection with Partially Observed Genotype Data
Description
Usage
Format
Details
Author(s)
Source
References
Examples
Description
The genotype data for family B73 x ki11 Recombinant Inbred Line (RIL) from NAM population.
Usage
1
Format
The format is a list containing two matrices. 1. the data matrix with 1106 single-nucleotide polymorphism (SNP) markers for 191 individuals. 2. Information
about the SNP markers regarding their location in the genome.
Details
The Nested Association Mapping (NAM) initiative in maize populations is designed to reveal the genetic structure of underlying complex traits in maize. As part of this study, an
inbred Ki11 maize line was crossed with the B73 reference line. This genotype data contains 1106 markers genotyped for 193 individuals. The B73 x Ki11 RIL
is a diploid population with three possible genotypes, k = 3. This data set can be used to detect epistatic selection, short- and long- range linkage disequilibrium between 1106 SNP markers.
Author(s)
Pariya Behrouzi and Ernst C. Wit
Maintainer: Pariya Behrouzi pariya.behrouzi@gmail.com
Source
It is publicly available at http://datacommons.cyverse.org/browse/iplant/home/shared/panzea/genotypes
References
1. P. Behrouzi and E. C. Wit. Detecting Epistatic Selection with Partially Observed Genotype Data Using Copula Graphical Models. arXiv, 2016.
2. McMullen, M. D., S. Kresovich, H. S. Villeda, P. Bradbury, H. Li, Q. Sun, S. Flint-Garcia, J. Thornsberry, C. Acharya, C. Bottoms, et al. (2009). Genetic properties of the maize nested association mapping population. Science 325 (5941), 737-740.
3. Rodgers-Melnick, E., P. J. Bradbury, R. J. Elshire, J. C. Glaubitz, C. B. Acharya, S. E. Mitchell, C. Li, Y. Li, and E. S. Buckler (2015). Recombination in diverse maize is stable, predictable, and associated with genetic load. Proceedings of the National Academy of Sciences 112 (12), 3823-3828.
Examples
1
2
3
Example output
Loading required package: Matrix
Loading required package: glasso
Loading required package: tmvtnorm
Loading required package: mvtnorm
Loading required package: stats4
Loading required package: gmm
Loading required package: sandwich
Loading required package: igraph
Attaching package: 'igraph'
The following objects are masked from 'package:stats':
decompose, spectrum
The following object is masked from 'package:base':
union
Loading required package: parallel
snp PZA01271.1 PZA03613.1 PZA02129.1 PZA02032.1 PHM2244.142 PZA02372.1
1 Chr: 1 1.0 1.0 1.0 1.0 1.0
2 cM: 0 0.9 3.7 5.1 9.7 11.5
PHM6238.36 PZA00181.2 PZA00528.1 PZA00175.2 PZA00447.8 PZA02284.1 PZA00731.7
1 1.0 1.0 1.0 1.0 1.0 1.0 1.0
2 13.4 15.6 15.6 16.2 17.4 17.9 17.9
PZA00566.5 PZA00106.10 PZA03521.1 PZA00887.1 PZA03551.1 PZA01497.1 csu1171.2
1 1.0 1.0 1.0 1.0 1.0 1.0 1.0
2 19.6 20.1 20.1 21.9 24.4 29.7 29.7
PZA01652.1 PZA02094.9 PZA02393.2 PZB00648.5 PZB00718.5 PZA01030.1 PZA00425.11
1 1.0 1.0 1.0 1.0 1.0 1.0 1.0
2 29.9 31.7 33.1 33.9 33.9 34.3 37.8
PHM13619.5 PZA02487.1 PHM3226.15 PHM4531.46 PZB01957.1 PZB02058.1 PZA02490.1
1 1.0 1.0 1.0 1.0 1.0 1.0 1.0
2 39.2 39.5 39.5 39.7 43.2 47.3 51.7
PZA01348.1 PZB01662.1 PZA01455.1 PZA02686.1 PZA02271.1 PZA02195.1 PZA00240.6
1 1 1 1 1 1.0 1.0 1
2 54 54 54 54 56.5 57.2 59
PHM3726.129 PZA00962.1 PZA02376.1 PZA03742.1 PZA03243.2 PZA00081.18 umc13.1
1 1 1.0 1.0 1.0 1.0 1.0 1.0
2 59 59.9 60.8 60.8 60.8 61.6 62.1
PZA03183.5 PZB00872.3 PHM4913.18 PZA02292.1 PZA03168.5 PZA02737.1 PZA02550.1
1 1.0 1.0 1.0 1.0 1 1.0 1.0
2 62.1 62.3 64.9 65.7 66 69.1 69.4
PZA02114.1 PZB01062.3 PZA03561.1 PZA01315.1 PZA01476.1 PZA00294.22 PZA03189.4
1 1.0 1.0 1 1 1.0 1.0 1.0
2 69.6 70.3 72 72 72.5 73.3 73.3
PHM5098.25 PZA01267.3 PZA00752.1 PZA01135.1 PZA03240.1.2 PZA03465.1
1 1.0 1.0 1.0 1.0 1.0 1.0
2 74.7 79.9 81.4 82.4 84.6 84.9
PZA00944.1.2 PZB01235.4 PHM9418.11 PZA02763.1 PZA02750.3 PZA00939.1
1 1.0 1.0 1.0 1.0 1.0 1.0
2 84.9 86.6 87.3 87.9 87.9 88.6
PZA01254.2 PZA02070.1 csu1138.3.4 PZA02577.1 PZA03200.2 PZA02741.1 PZA02135.2
1 1.0 1.0 1.0 1.0 1.0 1.0 1
2 88.6 89.1 89.3 89.6 89.7 91.4 92
an1.5 PZA00455.14.16 PZA02191.1 PHM1968.22 PZA00068.1 PZA03531.1 PZA00619.3
1 1.0 1.0 1.0 1.0 1.0 1.0 1.0
2 94.9 96.5 97.7 98.4 99.2 99.3 108.4
PZA02467.10 PZA03074.27 PZA01216.1 PZA00131.15 PZA01963.15 PHM5480.17
1 1.0 1 1.0 1.0 1.0 1.0
2 109.9 115 116.2 116.4 116.4 116.5
PZA01391.1 PZA01019.1 PZA03194.1 PZA03193.2 PHM12706.14 PZA02014.3 PZA01039.1
1 1.0 1.0 1.0 1.0 1.0 1.0 1.0
2 116.5 120.3 123.7 123.7 123.7 124.2 124.6
PZA03265.3 PHM6043.19 PZA03741.1 PHM15871.11 PHM5484.22 PZA02117.1
1 1.0 1.0 1.0 1.0 1.0 1.0
2 125.9 127.6 127.6 129.8 129.8 131.6
PZA00658.21 PZA02823.1 PHM2478.22 PHM4942.12 PZA00664.3 umc128.2 PZA02186.1
1 1.0 1.0 1 1 1.0 1.0 1.0
2 132.9 133.9 134 134 134.7 134.8 135.2
PZA03001.15 PZB01647.1 PZA00381.4 PZA03301.2 PHM4926.16 PZA03064.6
1 1.0 1.0 1.0 1.0 1.0 1
2 137.6 137.6 140.2 141.9 141.9 146
PHM16605.19 PZA03404.1 PZA02269.3.4 PHM3034.3 kip1.3 PHM14475.7 glb1.2
1 1.0 1.0 1.0 1.0 1 1.0 1.0
2 146.6 147.9 149.7 151.8 152 152.4 153.4
PZA01588.1 PZA00339.4 PZA01921.20.19 PHM5526.25 PZA02985.5 PZA03457.1
1 1.0 1.0 1.0 1.0 1.0 1.0
2 155.6 156.5 156.6 157.1 157.6 157.7
PZB00008.1 PZB00895.1 PZB00063.1 PZA02278.1 PZA02698.3 PZA00030.11 PZA02520.1
1 1.0 1.0 1.0 1.0 1.0 1.0 1.0
2 162.2 162.2 162.2 162.8 164.6 167.8 167.8
PZB00114.1 PZA01978.23 PZA02204.1 PZA00610.16 PZA03188.3 PZA02957.5
1 1.0 1.0 1.0 1.0 1.0 1.0
2 169.1 169.2 171.4 174.6 175.7 176.9
PZA03020.8 PZA00978.1 PZA01246.1 PZA02087.2 PZA00245.20 PHM18705.23
1 1.0 1.0 1.0 1.0 1.0 1.0
2 176.9 177.5 178.4 178.5 179.1 179.4
PZB01403.1 PZA00894.7 PZA03037.2 PZA03305.7.1 PZB01227.6 PZA02044.1
1 1 1.0 1.0 1.0 1 1.0
2 180 180.9 181.3 181.9 185 188.2
PZA00307.14 PZA00276.18 PZA00991.2 PZA00235.9 PZA00623.3 PZA02359.10
1 1.0 1.0 1.0 1.0 1.0 1
2 191.5 191.7 192.5 193.1 193.8 194
PHM9807.9 PZA01238.1.2 PZA01068.1 PZA00343.31 PHM1275.22 PZA00856.2
1 1.0 1.0 1.0 1.0 1 1.0
2 196.5 196.8 196.9 197.2 198 199.4
PZA00243.25 PZA01239.2 PZA01807.1 PZA00432.4 PHM7616.35 PHM5817.15 PZA00365.2
1 1.0 1 1 1.0 1.0 2 2
2 199.4 201 202 202.2 202.4 0 0
PZA00680.3 PHM1511.14 PZA02133.10 PHM13440.13 PZA00525.17 PZA02681.8
1 2 2.0 2.0 2.0 2.0 2.0
2 0 5.7 5.7 5.7 5.7 6.4
PZA02175.1 PZA00902.1 PZA02264.5 PZB01233.1 PZA01211.1 PZA00172.12
1 2.0 2.0 2.0 2.0 2 2.0
2 6.4 6.8 7.1 8.5 10 11.5
PZA00613.22 PZA02208.1 PZA02081.1 PZA01935.10 PZA03747.1 PZA03699.1
1 2.0 2.0 2.0 2.0 2.0 2.0
2 11.5 17.8 18.3 19.5 22.6 22.6
PZB00901.3.4 PZA02272.3 PHM5822.15 zfl2.9 PZA00108.4 PZA01753.1 PZA02337.4
1 2.0 2.0 2.0 2.0 2.0 2.0 2.0
2 27.6 28.2 29.8 36.2 38.6 40.6 41.5
PZA03559.1 PZA02417.2 PZA00497.4 PZA03228.4 PZA03634.1 PHM6111.5 PZA00590.1
1 2.0 2.0 2.0 2.0 2 2.0 2.0
2 41.8 47.7 49.8 50.8 52 53.3 53.3
PZA01879.1 PZA03142.5 PZA02080.1 PHM1962.33 PZA01755.1 PZA03568.1 PZA01374.1
1 2.0 2.0 2.0 2.0 2.0 2.0 2.0
2 53.4 54.9 56.8 56.8 56.9 58.8 59.9
PHM4586.12 PZA01336.1 PZA02058.1 PZA02378.7 PZA01993.7 PZA02496.1 PHM10404.8
1 2.0 2.0 2 2.0 2.0 2.0 2.0
2 61.8 62.2 63 64.1 64.2 67.9 67.9
PZB00183.4 PZA02450.1 PZA01820.1 PZA02774.1 PZA03629.1 PZA02168.1 PZA00635.7
1 2.0 2.0 2.0 2.0 2.0 2.0 2.0
2 69.4 70.4 70.9 71.3 72.1 72.1 73.5
PZA02279.1 PHM3457.6 PHM10321.11 PZA01902.1 PHM13360.13 PHM4880.179
1 2.0 2.0 2.0 2.0 2.0 2.0
2 73.6 74.8 74.8 76.3 76.5 76.5
PZA02549.3 PZA00485.2 PHM3626.3 PZA02626.1 PZA00029.17 PZA03211.6 PZA01280.2
1 2.0 2.0 2.0 2.0 2.0 2.0 2.0
2 76.5 77.1 77.4 79.8 79.8 80.6 80.7
PZA01537.2 PZA01232.1 PZA02939.10 PZA02465.1 PZA01321.1 PZA02371.6 PZA03692.1
1 2.0 2.0 2.0 2.0 2.0 2.0 2.0
2 81.2 81.7 81.7 82.5 82.8 83.1 83.3
PZA01638.1 PZA00515.10 PZA00637.6 PZA00495.5 PZA03644.1 vdac1a.1 PZA03659.1
1 2 2 2 2 2.0 2.0 2.0
2 84 84 84 84 84.2 85.5 85.5
PZA00224.4 PZA03184.2 PZA01735.1 PZA00755.2 PZA03529.1 PZA02890.4 PHM3055.9
1 2.0 2.0 2.0 2.0 2.0 2.0 2.0
2 86.9 90.1 91.5 94.9 97.5 98.9 103.7
PZA00824.2 PHM3668.12 PZA02017.1 PHM7953.11 PZA00803.3 PZA02731.1 PHM16125.47
1 2.0 2.0 2.0 2.0 2.0 2.0 2.0
2 105.3 106.1 106.2 106.3 106.5 107.1 107.5
PZB01103.2 PHM14412.4 PZA03165.1 PZA02329.2 PZA02077.1 PZA01885.2 PZA00390.7
1 2.0 2.0 2.0 2.0 2.0 2.0 2.0
2 107.8 107.9 109.9 113.7 115.3 115.7 115.7
PZB00772.7 PZA02964.7 PZA03602.1 PZA02456.1 PZA00804.1 PZA02680.1 PZA02471.5
1 2.0 2.0 2.0 2.0 2.0 2.0 2.0
2 117.5 117.5 120.5 122.1 123.9 125.9 127.3
PZA02418.2 PZA00527.10 PZA02012.7 PZA02453.1 PZA00163.4 PZA01991.3 PZA02564.2
1 2.0 2.0 2.0 2.0 2.0 2.0 2.0
2 127.3 129.8 132.4 132.9 134.3 134.3 135.1
PZB01013.1 PZA02266.3 PZA01895.1 PZA01352.5 PZA02727.1 PZA02170.1 PHM3094.23
1 2.0 2.0 2.0 2.0 2.0 2.0 2.0
2 136.3 139.7 139.8 141.3 142.7 151.6 152.5
PZA03321.4 PZA03577.1 PZD00022.5 PZA00309.1 PZA02090.1 PZD00038.2 PZA02678.1
1 2.0 2.0 2.0 3 3 3.0 3.0
2 153.4 154.9 155.7 0 15 18.2 20.1
PZA00100.10 PHM12859.7 PZA03527.1 PZA03212.3 PZA00749.1 PZB01944.1 PZA02098.2
1 3.0 3.0 3.0 3.0 3.0 3.0 3.0
2 20.5 20.5 22.5 25.4 25.7 28.9 29.7
PZA01765.1 PZA00508.2 PHM4204.69 PHM4145.18 PZA02427.1 PHM2343.25
1 3.0 3.0 3.0 3.0 3.0 3.0
2 33.7 38.3 38.3 50.2 52.1 53.4
PZA00210.1.9 PZA03054.5 PZA01473.1 PZA00348.11 PZA02255.2 zb21.1 PZA00297.2
1 3.0 3.0 3.0 3.0 3.0 3.0 3.0
2 54.3 54.7 54.8 54.9 54.9 55.5 55.5
PZA00380.10 PZA01114.2 PHM13823.7 PZA03070.9 PHM15899.9 PZA00581.3 PZA00279.2
1 3.0 3.0 3.0 3 3 3.0 3.0
2 55.5 55.5 55.5 56 56 56.4 56.9
PHM15474.5 PZA01447.1 PZA03119.1 PZA02589.1 PZA00265.6 PZA00509.1 PZA02296.1
1 3.0 3.0 3.0 3.0 3.0 3.0 3.0
2 57.1 57.1 57.3 57.6 57.6 57.7 57.9
PZA02699.1 PZA02134.3 PHM5502.31 PZA02742.1 PZA02645.2 PZA00707.9 PZA02619.1
1 3.0 3 3.0 3.0 3.0 3.0 3.0
2 57.9 58 58.1 58.2 58.3 58.9 59.7
PZA03198.3 PHM15449.10 PZA00413.20.18 PZA02299.16 PZA00363.7 PZD00016.4
1 3.0 3.0 3.0 3.0 3.0 3.0
2 60.5 60.8 60.8 61.2 61.8 62.4
PZD00015.5 PZB02002.1 PHM1745.16 PZA02474.1 PZA00920.1 PHM890.20 PZB02044.1
1 3.0 3.0 3.0 3.0 3.0 3.0 3.0
2 62.4 62.4 63.8 63.9 64.1 65.2 65.4
PZB02122.1 PZA01934.6 PHM4955.12 PZA00827.1 PZA00948.1 PZB02179.1 PZA00828.2
1 3.0 3.0 3.0 3.0 3.0 3.0 3.0
2 65.5 67.2 67.2 68.9 70.1 70.6 70.6
PHM9914.11 PZA00667.2 PZA01396.1 PHM4621.57 PZA00186.4 PHM2885.31
1 3.0 3.0 3.0 3 3 3.0
2 72.9 74.3 75.9 77 77 77.4
PZA03073.28.26 PHM1959.26 PZD00027.2 PZA02402.1 PZA03032.19 PZA00783.1
1 3.0 3.0 3.0 3 3.0 3.0
2 79.3 79.3 80.8 81 82.1 82.3
PZA01726.1 PZA02212.1 PZA01962.12 PHM17210.5 PZA02654.3 PHM1675.29 PZA03733.1
1 3 3.0 3 3 3.0 3.0 3.0
2 84 84.6 90 90 90.1 92.6 92.6
PZA03735.1 PZA03191.1.4 zb27.1 PZA03647.1 PZA00494.2 PZA01228.2 PHM824.17
1 3.0 3.0 3.0 3.0 3.0 3.0 3.0
2 92.6 96.7 96.7 96.9 97.8 100.1 100.5
PZA03743.1 PZA03744.1 PHM13673.53 PZA03255.1 PZB01109.1 PZA01035.1
1 3.0 3.0 3.0 3.0 3 3.0
2 100.6 100.6 100.8 101.4 103 103.2
PZA00308.24 PZA01457.1 PZA02122.9 PZA01501.1 PZA00892.5 PZA03154.4 PZA02733.1
1 3.0 3 3 3.0 3.0 3.0 3.0
2 103.7 104 105 106.3 107.7 109.2 111.2
PZA00538.18.15 PZA02516.1 PZA02616.1 PZB01457.1 PZA03146.4 sh2.21 PZA00750.1
1 3.0 3.0 3.0 3.0 3.0 3.0 3.0
2 115.8 118.4 120.7 123.9 127.7 128.4 129.8
PZA01154.1 PHM3342.31 PZA02665.2 PZA01233.1 PZA02514.1 PZA02824.4 PZA02668.2
1 3.0 3.0 3.0 3.0 3.0 3 3.0
2 131.4 131.4 132.8 132.8 132.8 133 134.6
PHM2672.19 PZA00219.7 PZA03391.1 PZA00402.1 PZA00316.10 PZA01688.3 PHM3852.23
1 3.0 3.0 3.0 3.0 3.0 3.0 3.0
2 136.8 136.8 136.8 140.7 145.1 145.3 145.3
PZA01360.3 PZA02182.1 PHM2423.33 PZA00088.3 PZA02423.1 PZA02509.15 PZA03227.1
1 3 3.0 3.0 3.0 3.0 4 4.0
2 146 146.8 152.4 154.7 155.5 0 0.1
PHM1184.26 PHM2438.28 PHM3301.28 PZA00436.7 PZA00683.4 PZA00975.1 PZA02358.1
1 4.0 4.0 4.0 4.0 4 4.0 4.0
2 7.2 12.2 19.4 21.3 22 25.9 31.6
PZA02138.1 PZA01122.1 PZA02385.6 PHM8527.2 PZA00139.4 PZA01422.3 PZA03048.18
1 4.0 4.0 4.0 4.0 4.0 4.0 4.0
2 33.8 33.9 39.2 40.4 43.9 47.7 48.3
PZA02002.1 PZA02457.1 PHM15427.11 PZA02705.1 PZA01106.3 PHM13623.14
1 4.0 4.0 4.0 4.0 4.0 4.0
2 49.4 49.4 52.1 52.1 52.8 52.8
PZA01713.4 PHM5572.19 PZA00541.1 PZA03247.1 PZA03385.1 PZA01751.2 PZA00445.22
1 4.0 4.0 4.0 4.0 4.0 4.0 4.0
2 52.8 52.8 52.8 52.8 53.4 53.7 55.2
PZA01759.1 PHM14055.6 PZA00726.8.10 PHM1307.11 bt2.7.4 PZA03254.1 PZA03587.1
1 4.0 4.0 4.0 4.0 4.0 4 4
2 55.4 55.4 55.4 55.4 55.8 56 56
PZA03597.1 PZA03270.2 PZA00218.1 PZA02767.1 PZA03564.1 PZA03203.2 PZA00104.1
1 4.0 4.0 4.0 4.0 4 4.0 4.0
2 56.1 56.3 56.4 56.5 57 57.4 57.7
PZA03231.1 PZB00093.7 PZA03409.1 PZA00704.1 fea2.3 PZA02027.1 PZA03459.1
1 4.0 4.0 4.0 4.0 4.0 4.0 4.0
2 57.9 58.3 58.6 58.6 58.8 58.8 58.9
PZA02147.1 PZA03152.3 PZA02982.7 PZA02992.15 PZA00057.2 PZA01926.1 PZA03116.1
1 4.0 4.0 4.0 4 4.0 4.0 4.0
2 60.6 61.8 61.8 62 65.9 69.8 75.3
PZA00453.2 PZA01289.1 PHM3155.14 PZA00271.1 PZA01477.3 PZA01658.1 PZA01681.1
1 4.0 4.0 4.0 4.0 4.0 4.0 4.0
2 76.2 77.2 78.4 80.6 81.6 81.7 81.9
PZA03275.4.1 PZA01187.1 PZD00030.2 PHM3637.14 PZA01976.9 PZA02194.1
1 4.0 4.0 4.0 4.0 4.0 4.0
2 85.2 89.1 90.7 92.7 92.8 93.2
PZA02289.2 PZA01766.1 PZA01954.1 PZA00941.2 PZA00344.10 PZB01461.1 PZA00332.5
1 4.0 4.0 4.0 4.0 4.0 4.0 4.0
2 93.2 97.9 98.3 100.5 101.3 102.6 102.9
PHM4348.16 PZA00193.2 PZA01790.1 PZA03205.1 PZA01810.2 PZA01566.1 PZA02421.1
1 4 4.0 4.0 4 4.0 4.0 4.0
2 105 105.4 106.7 107 107.4 107.9 108.1
PZA02614.2 PZA02779.1 PZA01332.2 PZA03081.1 PZB01021.1 PZA02479.1 PZA00155.1
1 4.0 4.0 4.0 4.0 4.0 4.0 4.0
2 108.3 108.7 110.1 110.4 110.6 111.3 111.5
PZA03155.3 PZA00636.7 PZA01367.2 PZA00878.2 PZA00521.3 PZA00694.6 PZA02151.3
1 4.0 4.0 4.0 4.0 4.0 4.0 4.0
2 112.2 112.5 112.5 112.5 115.2 116.1 118.4
PZA00513.1 PHM5599.20 PZA02585.2 PHM5665.26 PZA00529.4 PHM2100.21
1 4.0 4.0 4.0 4.0 4.0 4.0
2 118.9 119.6 119.8 124.5 124.5 126.9
PZA03322.5.3 PHM4125.11 PZA03598.1 PZA01905.12 PZA02239.12 PZA00682.17.2
1 4.0 4.0 4.0 4.0 4.0 4.0
2 128.1 129.3 135.6 136.6 138.1 139.7
PZA00282.19 PZA01887.1 PZA02367.1 PZA01983.1 PZA00818.1 PZA00191.5 PZA01438.1
1 4.0 5 5.0 5.0 5.0 5.0 5.0
2 141.1 0 0.1 0.2 0.6 3.5 7.2
PZA02316.22 PHM5359.10 PZA01570.1 PHM13122.43 PZA02653.12 PZA02462.1
1 5.0 5.0 5.0 5.0 5.0 5.0
2 9.1 10.1 10.9 13.3 22.1 25.4
PZB00054.3 PZA02753.1 PHM3137.17 PZB00094.1 PZA02029.21 PZA01371.1 PZA01925.1
1 5 5.0 5.0 5.0 5.0 5.0 5.0
2 26 27.5 28.4 30.2 30.3 30.3 30.4
PZA00865.1 PZB00079.4 PZA01284.6 PZA03092.7 PZA00112.5 PZA00985.1 PZA01327.1
1 5.0 5.0 5.0 5.0 5.0 5.0 5.0
2 30.8 36.5 37.9 37.9 41.5 42.7 45.4
PZA03578.1 PZA01523.1 PZA00517.7 PZA03226.3 PZA03274.4 PZA02792.26.25
1 5 5 5 5.0 5.0 5.0
2 47 47 49 50.8 50.8 51.8
PZA01427.1 PHM565.31 PZA00934.2 PZA02113.1 PZA00801.1 PZB00869.4 PZA01563.1
1 5.0 5.0 5.0 5.0 5.0 5.0 5.0
2 53.6 53.9 56.1 56.2 57.3 57.5 57.6
PHM4647.8 PZA00499.3 PHM16854.3 PZA00981.3 PHM3691.18 PZA00996.1 PZA01530.1
1 5.0 5 5 5.0 5.0 5.0 5.0
2 57.6 58 58 58.3 58.3 58.3 58.3
PHM12992.5 PZA02207.1 PZA00805.1 PZA00522.12.7 PZA01804.1 PZA00222.7
1 5.0 5.0 5.0 5.0 5.0 5.0
2 58.4 60.6 62.3 62.4 62.4 62.6
PHM1870.20 PZA03451.5 PZA02676.2 PZB01115.3 PHM3171.5 PZB00232.2 PZA01050.1
1 5 5 5.0 5.0 5.0 5 5
2 63 63 63.2 63.5 63.6 64 64
PHM4165.14 PZB01112.1 PZA01349.2 PZA02525.1 PZA03677.1 PHM5798.39 PZA01303.1
1 5.0 5 5.0 5.0 5.0 5.0 5
2 64.4 65 65.4 65.5 65.9 65.9 66
PZA00261.6 PZA02862.3 PZA02818.6 PZA01779.1 PZA00273.5 PZA01693.1 PZA03049.24
1 5.0 5.0 5.0 5.0 5.0 5.0 5.0
2 66.8 66.8 67.5 68.1 68.7 68.7 69.5
PZA00643.13 PZA00881.1 PZA02164.16 PZA01365.1 PZA00067.10 PZB01017.1
1 5.0 5 5 5.0 5.0 5.0
2 69.7 70 70 71.3 72.5 74.5
PZA01608.1 PZA01796.1 PZA00148.3 PZA02981.2 ae1.8.7 PZA01763.2 PZA02641.2
1 5.0 5.0 5.0 5.0 5.0 5.0 5.0
2 74.8 75.6 76.9 78.4 79.7 79.8 80.7
PZA03536.1 PZA01294.2.1 PZA00255.14 PZA02040.2 PZA00300.14 PZA00987.1
1 5.0 5.0 5.0 5.0 5.0 5
2 80.7 80.7 81.7 83.3 83.4 84
PZA01410.1 PZA03717.1 PZA03714.1 PZA01304.1 PHM1899.157 PZA02633.4 PZA02408.2
1 5.0 5.0 5.0 5.0 5.0 5.0 5.0
2 84.1 87.2 87.2 89.1 89.1 90.2 90.6
PZA02209.2 PZA02356.7 PHM5296.6 PZA03324.1 PZA01575.1 PZA03452.6 PZA03172.3
1 5.0 5.0 5.0 5.0 5.0 5.0 5.0
2 90.6 90.6 90.6 90.8 91.1 91.9 98.2
PZA02383.1 PZA03317.1 PZA02751.1 PZA03320.6 PZA00352.23 PZA02426.1 PZA02411.3
1 5.0 5.0 5.0 5.0 5.0 5.0 5.0
2 98.8 99.3 99.5 99.7 100.2 101.2 101.5
PHM532.23 PZA00652.17 PZA03024.16 PZA01142.4 PZA02820.17 PZA01265.1
1 5.0 5.0 5.0 5 5.0 5
2 101.9 106.2 106.4 107 108.8 109
PZB00765.1 PZA02060.1 PZA02513.1 PZA02667.1 PZA00395.2 PHM3512.186 PZA00963.3
1 5.0 5.0 5.0 5.0 5.0 5 5
2 110.1 110.2 110.3 110.7 110.9 112 114
PZA00980.1 PZA02068.1 PZA00545.26 PZA02015.11 PZA03167.5 PZA01259.1
1 5.0 5.0 5.0 5.0 5.0 5.0
2 114.3 115.1 123.1 124.9 125.2 126.4
PZA01680.3 PZA00836.1 PZA01140.1 PZA02390.1 PZA02480.1 PZA02769.1 PZA01060.1
1 5.0 5.0 5 5 5.0 5.0 5.0
2 127.2 132.6 137 138 152.3 153.3 153.4
PHM15961.13 PZA00158.2 PZA03047.12 PZA00440.15.1 PZA02948.24 PZA03063.21
1 6 6.0 6.0 6.0 6.0 6.0
2 0 5.1 6.9 7.1 7.8 7.8
PZA01901.1 PZA01509.1 PZA03120.1 PZA01527.1 PZA01425.2 PZA00355.2 PZA00427.3
1 6.0 6.0 6.0 6.0 6.0 6.0 6.0
2 8.1 8.2 8.7 8.8 10.7 11.1 11.1
PZA00543.12 PZA03069.8.4 PZA02606.1 PZD00072.2 PZB01009.2.1 PHM2551.31
1 6.0 6.0 6.0 6.0 6.0 6.0
2 11.3 11.7 11.8 12.4 12.9 13.1
PZA00006.17 PHM8909.12 PZA00214.1 PZA03488.1 PZA00942.2 PZB01658.1 PZA03461.1
1 6.0 6.0 6.0 6.0 6.0 6.0 6.0
2 13.1 18.6 18.6 22.1 27.8 28.7 33.4
PZA01029.1 PZA02048.2 PZA02396.14 PZA01589.2 PZA01736.1 PZA00382.17
1 6.0 6.0 6.0 6.0 6.0 6.0
2 41.5 41.5 41.5 42.1 43.4 43.7
PZA01055.1 lac1.3 PZA00571.1 PZA01729.1 PHM13020.10 PZA00473.5 PZA01591.1
1 6.0 6.0 6.0 6.0 6.0 6.0 6.0
2 44.4 44.4 44.6 45.7 45.7 45.9 46.3
PZA01552.1 PZA01618.2 PZB00414.2 PZA01884.1 PZA00357.19 PZA02262.3 PZA02328.5
1 6 6 6 6.0 6.0 6.0 6.0
2 48 48 50 50.7 52.5 52.5 53.1
PZA02187.1.2 PZA02478.7 PZA02673.1 PZA02148.1 PZB00942.1 PZB01308.1
1 6 6.0 6.0 6.0 6.0 6.0
2 54 54.7 55.7 56.3 56.6 56.6
PZA03102.9 PZA02247.1 PHM11985.27 PZA01144.1 PZA01342.2 PZA02436.1 PZA01672.1
1 6.0 6.0 6.0 6.0 6.0 6.0 6.0
2 57.5 58.2 59.2 59.5 61.4 61.8 70.4
PZA01462.1 PZA03027.12 PHM5794.13 PZA00223.4 PHM4748.16 PZB01569.7 PHM4503.25
1 6.0 6.0 6.0 6.0 6.0 6.0 6.0
2 72.3 75.1 75.8 75.8 78.6 86.2 86.5
PZA00266.7 PZA01468.1 PHM7922.8 PZA00889.2 PZA00821.1 PZA02688.2 PZB01222.1
1 6.0 6.0 6 6.0 6.0 6.0 6.0
2 86.7 86.8 94 94.1 95.7 96.4 97.3
PZA02141.1 PZA00910.1 PZA01875.1 PHM4468.13 PZA02815.25 PZA01426.1 PZA02035.5
1 6 6.0 6.0 6.0 6.0 7 7
2 101 106.6 108.2 108.3 109.7 0 7
PHM9241.13 PHM3078.12 PZA01909.1.2 PZA02872.1 PZA00256.27 PHM4080.15
1 7.0 7.0 7.0 7.0 7.0 7.0
2 21.8 26.3 28.4 39.9 43.9 44.7
PZA03624.1 PZA03344.2 PHM15501.9 PZA00132.17 PHM4353.31 PZA03687.1 PZA00084.2
1 7.0 7.0 7.0 7.0 7.0 7.0 7.0
2 44.7 45.8 47.8 48.1 48.2 48.4 49.1
PZA01230.1 PZA03723.1 PZA02612.1 PZA01936.4 PZA03363.1 PZA01445.1 PZA01607.1
1 7.0 7.0 7.0 7.0 7.0 7.0 7.0
2 49.1 49.1 49.1 49.1 49.1 49.1 49.2
PHM4818.15 PHM12830.14 PZA00418.2 PHM904.21 PZA03645.1 PZA02291.1
1 7.0 7.0 7.0 7.0 7.0 7.0
2 49.2 49.2 49.2 49.2 49.4 49.5
PZA01210.1.2 PZA02018.1 PZA01113.1 PZA01933.3 PZA02236.1 PZA02365.7
1 7.0 7 7.0 7.0 7.0 7.0
2 49.5 50 50.2 50.7 51.2 61.4
PZA00616.13 PZA01690.7 PZA01946.7 PZA00986.1 PZA02352.1 PZA02643.1 PZA01714.1
1 7.0 7.0 7.0 7.0 7.0 7.0 7.0
2 63.2 63.4 63.7 63.7 64.9 69.8 69.8
PZA03583.1 PZB00752.1 PZD00054.1 PZA01542.1 PZA00740.3 PZA00111.10
1 7.0 7.0 7.0 7.0 7.0 7.0
2 69.8 71.2 71.5 72.2 72.7 72.7
PZA02449.13 PZA02984.10 PZA03728.1 PZA03166.1 PZA02854.13 PHM9162.135
1 7.0 7.0 7.0 7.0 7.0 7.0
2 73.3 73.4 75.3 76.2 76.5 76.5
PZA00405.7.6 PHM16437.20 PZA02722.1 PZA03176.4 PZA02260.2 PHM112.8 PZA02386.2
1 7 7.0 7.0 7.0 7.0 7.0 7.0
2 77 81.1 81.2 89.4 92.2 92.2 95.2
PZA00795.1 PZA02373.1 PHM7898.10 PZA02223.2 PHM10225.15 PZA01533.2 PZA00505.6
1 7.0 7.0 7.0 7.0 7.0 7.0 7.0
2 105.2 110.7 111.8 112.2 112.3 112.7 113.4
PZA01802.3 PZA01414.1 PZA01028.2 PZA00386.4 PZA00695.3 PZB00605.1 PZA01278.2
1 7.0 7.0 7.0 7.0 7.0 7.0 7.0
2 114.6 115.4 117.6 117.8 120.4 120.8 121.1
PZA01744.1 PZA00424.1 PZA01044.1 PZA02274.1 PZA02388.1 PZA02174.2 PZA01600.2
1 7 7.0 7.0 7 8 8.0 8.0
2 134 134.1 134.4 135 0 9.8 10.5
PZA01623.3 PZA00368.1 PZA00058.1 PHM4711.14 PZA00416.7 PZA01601.1 PZA03178.1
1 8.0 8.0 8.0 8.0 8.0 8.0 8.0
2 14.8 17.1 17.6 18.3 20.7 21.2 29.8
PZA01691.1 PHM9695.8 PZA01951.1 PZA01079.1 PZA02955.3 PZA01357.2 PZA02528.1
1 8.0 8.0 8.0 8.0 8.0 8.0 8.0
2 30.2 32.1 32.3 36.4 37.1 39.3 41.7
PZA02454.2 PHM1978.111 PHM6428.11 PZA01186.1 PZA00758.1 PHM2350.17 PZA01196.2
1 8 8.0 8.0 8.0 8.0 8 8.0
2 42 47.4 48.6 48.6 49.9 50 50.6
PZA00498.5 PZA01209.1 PZA02203.1 PZA00793.2 PZA01960.1 PZA00379.2 PZA00717.15
1 8.0 8.0 8.0 8.0 8 8 8
2 52.4 52.4 52.4 52.7 53 53 53
PZA01257.1 PHM11114.7 PZA01470.1 PZA01301.1 PZA01363.2 PZA02522.1 PZA01297.1
1 8 8.0 8.0 8.0 8.0 8.0 8.0
2 53 53.4 53.9 54.7 54.7 54.8 54.8
PZA02683.1 PHM3978.104 PZA00908.2 PZA03135.1 PZA02019.1 PHM4134.8 PZA03579.1
1 8 8.0 8.0 8.0 8 8.0 8.0
2 56 57.5 57.5 57.7 58 59.7 59.7
PZA00739.1 PZA01972.14 PZA02566.1 PZA01072.1 PZA03012.7 PHM934.19 PZA02748.3
1 8.0 8.0 8.0 8.0 8.0 8.0 8.0
2 59.7 61.3 61.5 61.9 62.3 63.3 63.5
PZA03638.1 PZA03639.1 PZA03637.1 PHM3993.28 PZB02155.1 PZA01038.1
1 8.0 8.0 8.0 8.0 8.0 8.0
2 64.1 64.1 64.1 64.2 66.9 67.1
PHM10525.9.11 PZA00118.1.5 PZA03612.2.1 PZA01049.1 PHM5468.25 PZA01787.1
1 8.0 8.0 8 8 8 8
2 67.3 67.4 68 68 68 68
PHM14152.18 PZA02033.1 PHM4203.11 PZA00770.1 PHM448.23 PZA00766.1 PZA00090.1
1 8 8.0 8.0 8.0 8.0 8.0 8.0
2 69 69.7 69.7 69.7 69.8 69.8 70.6
PZA02011.1 PZA00429.1 PZA03651.1 PZA03650.1 PHM4757.14 PZA03182.5 PZA00951.1
1 8.0 8.0 8.0 8.0 8.0 8.0 8.0
2 71.6 74.3 76.1 76.1 80.2 80.8 81.6
PHM12749.13 PHM15278.6 PZA03698.1 PZA01741.1 PZA00838.2 PHM3465.6 PZA00706.16
1 8 8.0 8.0 8.0 8.0 8.0 8.0
2 82 82.3 82.4 82.6 87.3 88.2 88.5
PHM15623.10 PZB00811.1 PZA00675.1 PHM1834.47 PZA02746.2 PZA00460.3.8
1 8.0 8.0 8.0 8.0 8.0 8.0
2 88.5 89.5 91.3 92.1 94.1 95.6
PZA00362.1 PZA00020.5 PZA01316.1 PHM4786.9 PZA00904.1 PZA01964.29 PHM14046.9
1 8.0 8.0 8 8.0 8.0 8.0 8.0
2 96.5 98.2 99 100.3 103.7 106.9 117.5
PZA00189.23 PHM14104.23 PZA00760.1 PHM2749.10 PZA01290.1 PHM5019.59
1 8 8.0 8 8.0 8.0 8.0
2 119 123.2 125 127.4 127.9 127.9
PZA02281.3 PZA00071.2 PHM3925.79 PZA00285.3 PZA01799.1.2 PHM1218.6 sh1.12.11
1 8.0 8.0 9 9.0 9.0 9.0 9.0
2 128.4 129.8 0 12.6 14.6 18.6 18.6
PZA01195.3 PZA00466.1 PZA01386.3 PZA02344.1 PHM5181.10 PZA02702.1 PZA03416.7
1 9.0 9.0 9 9.0 9.0 9.0 9.0
2 18.7 20.7 21 23.8 26.8 28.5 30.4
PHM9374.5 PZA00860.1 PZA03058.22.21 zb7.2 PZB01042.2 ZHD1.1 PZB00540.3
1 9.0 9.0 9.0 9.0 9.0 9.0 9
2 31.2 32.6 34.5 38.9 39.4 39.4 40
PZA01999.3 PZB00544.2 wx1.1 PZB00547.3 PZB01110.6 PZA02648.2 PZB00959.1
1 9 9 9 9 9.0 9.0 9.0
2 40 40 40 40 41.8 42.8 44.5
PZA00693.3 PZA03036.6 PZA02878.13 PZA03469.1 PZA00589.10 PZB00014.1
1 9.0 9.0 9.0 9.0 9.0 9.0
2 44.5 44.6 45.2 45.3 45.3 45.4
PZA03057.3 PZA00925.2 PZA01791.2 PZB00761.1 PZA01861.1 PZA01062.1 PZA02545.1
1 9.0 9.0 9.0 9.0 9.0 9 9
2 45.9 45.9 46.1 46.3 46.6 47 47
PZA03596.1 PZA00947.1 PZA01281.2 PZB01899.1 PZA00225.8 PZA00152.1 PZB01358.1
1 9.0 9.0 9.0 9.0 9.0 9.0 9.0
2 47.2 49.1 49.1 49.5 51.9 53.1 53.1
PZA00015.5 PZA03470.1 PZA03235.1 PZA02613.1 PZA02325.4 PZA01819.1 PZA00840.1
1 9 9.0 9.0 9.0 9.0 9.0 9
2 54 54.7 56.7 57.3 57.7 58.1 62
PZA00060.2 PZA00213.19 PHM3330.25 PHM4905.6 PZA01866.1 PZA02397.1 PZA02111.1
1 9.0 9.0 9.0 9.0 9.0 9.0 9.0
2 62.2 62.9 63.3 64.3 64.3 64.5 65.4
PZA03670.1 PZA03671.1 PZA02235.14 PZA01096.1 PHM1766.1 PZA02252.2 PZA01369.1
1 9.0 9.0 9 9.0 9 9.0 9.0
2 65.5 65.5 67 69.4 74 74.2 85.6
PHM816.29 PHM11226.13 PZB00221.3 PZD00055.1 PZA02197.1 PZA00323.3 PHM4604.18
1 9.0 9.0 9.0 9.0 9.0 9.0 9.0
2 87.3 87.8 87.9 87.9 88.4 88.5 89.3
PZA01715.1.2 PZA00511.3 PZA02381.1 PZA00912.2 PHM4303.16 PZA00832.1
1 9.0 9.0 9.0 9.0 9.0 9.0
2 89.4 89.8 93.5 94.8 98.2 101.2
PHM15445.25 PZA00708.3 PHM1911.173 PHM13681.12 PZA03573.1 PZA02554.1
1 9.0 9 9.0 9.0 9.0 10
2 101.2 103 107.5 107.6 114.8 0
PZA02221.20 PZA01313.2 PHM3631.47 PZA02095.10 PHM2828.83 PHM3765.7 PZA01883.2
1 10.0 10.0 10.0 10.0 10.0 10 10.0
2 0.2 5.9 8.9 15.2 21.3 24 24.8
PZA01451.1 PZB01301.5 PHM15331.16 PZA00463.3 PZA01642.1 PHM3896.9 PZA02961.6
1 10 10.0 10.0 10 10.0 10.0 10.0
2 25 26.8 28.5 31 32.4 32.4 33.3
PHM3922.32 PZA00079.1 PZA02470.2 PZA02853.11 PZD00033.3 PZA03491.1 PZA01597.1
1 10.0 10.0 10.0 10.0 10 10.0 10.0
2 33.8 33.9 33.9 35.8 36 36.2 36.5
PZA00409.17 PZA01677.1 PZA02941.7 PZA00933.3 PHM2770.19 PZA01877.2 PZB00409.6
1 10.0 10.0 10.0 10.0 10.0 10.0 10.0
2 36.5 36.9 36.9 36.9 36.9 38.6 40.1
PZA00337.4 PHM12990.15 PZA00814.1 PZA01619.1 PZA00048.1 PZA00400.3 PZA02398.2
1 10.0 10.0 10.0 10.0 10.0 10 10.0
2 40.6 40.8 41.1 41.9 42.9 43 43.4
PHM537.22 PHM12625.18 PHM18195.6 PZA00444.1 PZA01292.1 PZA01919.2 PZA02128.3
1 10.0 10.0 10.0 10.0 10.0 10.0 10.0
2 43.4 43.8 43.8 43.8 44.3 44.7 44.8
PZA01089.1 PHM4341.42 PZA02219.2 PHM13687.14 PZA01141.1 PZA03713.1 PZA03196.1
1 10.0 10.0 10.0 10.0 10.0 10 10.0
2 46.7 46.7 47.1 47.1 47.6 48 48.8
PZA00866.2 PZA01005.1 PZA00647.9 PZA01241.2 PZA02320.1 PZB01111.8 PZA01456.2
1 10 10.0 10.0 10.0 10.0 10.0 10.0
2 49 49.2 52.2 53.2 56.1 58.4 61.6
PHM18513.156 PHM15868.56 PZA02663.1 PZA01995.2 PZA03603.1 PZA03605.1
1 10 10.0 10.0 10.0 10.0 10.0
2 63 64.5 64.8 69.2 75.4 75.4
PZA03604.1 PZA03606.1 PZA03607.1 PZA00130.9 PZA02969.9 PZA02049.1 PZA00007.1
1 10.0 10.0 10.0 10.0 10.0 10.0 10.0
2 75.4 75.4 75.4 80.8 81.3 81.6 82.1
PHM5435.25 PZA01073.1 PZA02167.2 PZA01001.2 PZA02578.1 PZA00062.4 PZA02527.2
1 10.0 10.0 10.0 10 10.0 10.0 10.0
2 82.2 83.2 85.3 91 91.2 93.7 101.9
epistasis documentation built on May 2, 2019, 5:09 a.m.
R Package Documentation
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Description Usage Format Details Author(s) Source References Examples
Description
The genotype data for family B73 x ki11 Recombinant Inbred Line (RIL) from NAM population.
Usage
1 |
Format
The format is a list containing two matrices. 1. the data matrix with 1106 single-nucleotide polymorphism (SNP) markers for 191 individuals. 2. Information about the SNP markers regarding their location in the genome.
Details
The Nested Association Mapping (NAM) initiative in maize populations is designed to reveal the genetic structure of underlying complex traits in maize. As part of this study, an inbred Ki11 maize line was crossed with the B73 reference line. This genotype data contains 1106 markers genotyped for 193 individuals. The B73 x Ki11 RIL is a diploid population with three possible genotypes, k = 3. This data set can be used to detect epistatic selection, short- and long- range linkage disequilibrium between 1106 SNP markers.
Author(s)
Pariya Behrouzi and Ernst C. Wit
Maintainer: Pariya Behrouzi pariya.behrouzi@gmail.com
Source
It is publicly available at http://datacommons.cyverse.org/browse/iplant/home/shared/panzea/genotypes
References
1. P. Behrouzi and E. C. Wit. Detecting Epistatic Selection with Partially Observed Genotype Data Using Copula Graphical Models. arXiv, 2016.
2. McMullen, M. D., S. Kresovich, H. S. Villeda, P. Bradbury, H. Li, Q. Sun, S. Flint-Garcia, J. Thornsberry, C. Acharya, C. Bottoms, et al. (2009). Genetic properties of the maize nested association mapping population. Science 325 (5941), 737-740.
3. Rodgers-Melnick, E., P. J. Bradbury, R. J. Elshire, J. C. Glaubitz, C. B. Acharya, S. E. Mitchell, C. Li, Y. Li, and E. S. Buckler (2015). Recombination in diverse maize is stable, predictable, and associated with genetic load. Proceedings of the National Academy of Sciences 112 (12), 3823-3828.
Examples
1 2 3 |
Example output
Loading required package: Matrix
Loading required package: glasso
Loading required package: tmvtnorm
Loading required package: mvtnorm
Loading required package: stats4
Loading required package: gmm
Loading required package: sandwich
Loading required package: igraph
Attaching package: 'igraph'
The following objects are masked from 'package:stats':
decompose, spectrum
The following object is masked from 'package:base':
union
Loading required package: parallel
snp PZA01271.1 PZA03613.1 PZA02129.1 PZA02032.1 PHM2244.142 PZA02372.1
1 Chr: 1 1.0 1.0 1.0 1.0 1.0
2 cM: 0 0.9 3.7 5.1 9.7 11.5
PHM6238.36 PZA00181.2 PZA00528.1 PZA00175.2 PZA00447.8 PZA02284.1 PZA00731.7
1 1.0 1.0 1.0 1.0 1.0 1.0 1.0
2 13.4 15.6 15.6 16.2 17.4 17.9 17.9
PZA00566.5 PZA00106.10 PZA03521.1 PZA00887.1 PZA03551.1 PZA01497.1 csu1171.2
1 1.0 1.0 1.0 1.0 1.0 1.0 1.0
2 19.6 20.1 20.1 21.9 24.4 29.7 29.7
PZA01652.1 PZA02094.9 PZA02393.2 PZB00648.5 PZB00718.5 PZA01030.1 PZA00425.11
1 1.0 1.0 1.0 1.0 1.0 1.0 1.0
2 29.9 31.7 33.1 33.9 33.9 34.3 37.8
PHM13619.5 PZA02487.1 PHM3226.15 PHM4531.46 PZB01957.1 PZB02058.1 PZA02490.1
1 1.0 1.0 1.0 1.0 1.0 1.0 1.0
2 39.2 39.5 39.5 39.7 43.2 47.3 51.7
PZA01348.1 PZB01662.1 PZA01455.1 PZA02686.1 PZA02271.1 PZA02195.1 PZA00240.6
1 1 1 1 1 1.0 1.0 1
2 54 54 54 54 56.5 57.2 59
PHM3726.129 PZA00962.1 PZA02376.1 PZA03742.1 PZA03243.2 PZA00081.18 umc13.1
1 1 1.0 1.0 1.0 1.0 1.0 1.0
2 59 59.9 60.8 60.8 60.8 61.6 62.1
PZA03183.5 PZB00872.3 PHM4913.18 PZA02292.1 PZA03168.5 PZA02737.1 PZA02550.1
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PHM9914.11 PZA00667.2 PZA01396.1 PHM4621.57 PZA00186.4 PHM2885.31
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PZA03073.28.26 PHM1959.26 PZD00027.2 PZA02402.1 PZA03032.19 PZA00783.1
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PZA03743.1 PZA03744.1 PHM13673.53 PZA03255.1 PZB01109.1 PZA01035.1
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PZA00308.24 PZA01457.1 PZA02122.9 PZA01501.1 PZA00892.5 PZA03154.4 PZA02733.1
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PZA03597.1 PZA03270.2 PZA00218.1 PZA02767.1 PZA03564.1 PZA03203.2 PZA00104.1
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PHM4348.16 PZA00193.2 PZA01790.1 PZA03205.1 PZA01810.2 PZA01566.1 PZA02421.1
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PHM15961.13 PZA00158.2 PZA03047.12 PZA00440.15.1 PZA02948.24 PZA03063.21
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PZA01901.1 PZA01509.1 PZA03120.1 PZA01527.1 PZA01425.2 PZA00355.2 PZA00427.3
1 6.0 6.0 6.0 6.0 6.0 6.0 6.0
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PZA00543.12 PZA03069.8.4 PZA02606.1 PZD00072.2 PZB01009.2.1 PHM2551.31
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PZA00006.17 PHM8909.12 PZA00214.1 PZA03488.1 PZA00942.2 PZB01658.1 PZA03461.1
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PZA01029.1 PZA02048.2 PZA02396.14 PZA01589.2 PZA01736.1 PZA00382.17
1 6.0 6.0 6.0 6.0 6.0 6.0
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PZA01055.1 lac1.3 PZA00571.1 PZA01729.1 PHM13020.10 PZA00473.5 PZA01591.1
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PZA01552.1 PZA01618.2 PZB00414.2 PZA01884.1 PZA00357.19 PZA02262.3 PZA02328.5
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PZA02187.1.2 PZA02478.7 PZA02673.1 PZA02148.1 PZB00942.1 PZB01308.1
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PZA00266.7 PZA01468.1 PHM7922.8 PZA00889.2 PZA00821.1 PZA02688.2 PZB01222.1
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PZA02141.1 PZA00910.1 PZA01875.1 PHM4468.13 PZA02815.25 PZA01426.1 PZA02035.5
1 6 6.0 6.0 6.0 6.0 7 7
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PHM9241.13 PHM3078.12 PZA01909.1.2 PZA02872.1 PZA00256.27 PHM4080.15
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PZA01230.1 PZA03723.1 PZA02612.1 PZA01936.4 PZA03363.1 PZA01445.1 PZA01607.1
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PHM4818.15 PHM12830.14 PZA00418.2 PHM904.21 PZA03645.1 PZA02291.1
1 7.0 7.0 7.0 7.0 7.0 7.0
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PZA01210.1.2 PZA02018.1 PZA01113.1 PZA01933.3 PZA02236.1 PZA02365.7
1 7.0 7 7.0 7.0 7.0 7.0
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PZA00616.13 PZA01690.7 PZA01946.7 PZA00986.1 PZA02352.1 PZA02643.1 PZA01714.1
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PZA03583.1 PZB00752.1 PZD00054.1 PZA01542.1 PZA00740.3 PZA00111.10
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PZA02449.13 PZA02984.10 PZA03728.1 PZA03166.1 PZA02854.13 PHM9162.135
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PZA00405.7.6 PHM16437.20 PZA02722.1 PZA03176.4 PZA02260.2 PHM112.8 PZA02386.2
1 7 7.0 7.0 7.0 7.0 7.0 7.0
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PZA00795.1 PZA02373.1 PHM7898.10 PZA02223.2 PHM10225.15 PZA01533.2 PZA00505.6
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PZA01802.3 PZA01414.1 PZA01028.2 PZA00386.4 PZA00695.3 PZB00605.1 PZA01278.2
1 7.0 7.0 7.0 7.0 7.0 7.0 7.0
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PZA01744.1 PZA00424.1 PZA01044.1 PZA02274.1 PZA02388.1 PZA02174.2 PZA01600.2
1 7 7.0 7.0 7 8 8.0 8.0
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PZA01623.3 PZA00368.1 PZA00058.1 PHM4711.14 PZA00416.7 PZA01601.1 PZA03178.1
1 8.0 8.0 8.0 8.0 8.0 8.0 8.0
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PZA01691.1 PHM9695.8 PZA01951.1 PZA01079.1 PZA02955.3 PZA01357.2 PZA02528.1
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PZA02454.2 PHM1978.111 PHM6428.11 PZA01186.1 PZA00758.1 PHM2350.17 PZA01196.2
1 8 8.0 8.0 8.0 8.0 8 8.0
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PZA00498.5 PZA01209.1 PZA02203.1 PZA00793.2 PZA01960.1 PZA00379.2 PZA00717.15
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PZA01257.1 PHM11114.7 PZA01470.1 PZA01301.1 PZA01363.2 PZA02522.1 PZA01297.1
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PZA02683.1 PHM3978.104 PZA00908.2 PZA03135.1 PZA02019.1 PHM4134.8 PZA03579.1
1 8 8.0 8.0 8.0 8 8.0 8.0
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PZA00739.1 PZA01972.14 PZA02566.1 PZA01072.1 PZA03012.7 PHM934.19 PZA02748.3
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PZA03638.1 PZA03639.1 PZA03637.1 PHM3993.28 PZB02155.1 PZA01038.1
1 8.0 8.0 8.0 8.0 8.0 8.0
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PHM10525.9.11 PZA00118.1.5 PZA03612.2.1 PZA01049.1 PHM5468.25 PZA01787.1
1 8.0 8.0 8 8 8 8
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PHM14152.18 PZA02033.1 PHM4203.11 PZA00770.1 PHM448.23 PZA00766.1 PZA00090.1
1 8 8.0 8.0 8.0 8.0 8.0 8.0
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PZA02011.1 PZA00429.1 PZA03651.1 PZA03650.1 PHM4757.14 PZA03182.5 PZA00951.1
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PHM12749.13 PHM15278.6 PZA03698.1 PZA01741.1 PZA00838.2 PHM3465.6 PZA00706.16
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PHM15623.10 PZB00811.1 PZA00675.1 PHM1834.47 PZA02746.2 PZA00460.3.8
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PZA00362.1 PZA00020.5 PZA01316.1 PHM4786.9 PZA00904.1 PZA01964.29 PHM14046.9
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PZA00189.23 PHM14104.23 PZA00760.1 PHM2749.10 PZA01290.1 PHM5019.59
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PZA02281.3 PZA00071.2 PHM3925.79 PZA00285.3 PZA01799.1.2 PHM1218.6 sh1.12.11
1 8.0 8.0 9 9.0 9.0 9.0 9.0
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PZA01195.3 PZA00466.1 PZA01386.3 PZA02344.1 PHM5181.10 PZA02702.1 PZA03416.7
1 9.0 9.0 9 9.0 9.0 9.0 9.0
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PHM9374.5 PZA00860.1 PZA03058.22.21 zb7.2 PZB01042.2 ZHD1.1 PZB00540.3
1 9.0 9.0 9.0 9.0 9.0 9.0 9
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PZA01999.3 PZB00544.2 wx1.1 PZB00547.3 PZB01110.6 PZA02648.2 PZB00959.1
1 9 9 9 9 9.0 9.0 9.0
2 40 40 40 40 41.8 42.8 44.5
PZA00693.3 PZA03036.6 PZA02878.13 PZA03469.1 PZA00589.10 PZB00014.1
1 9.0 9.0 9.0 9.0 9.0 9.0
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PZA03057.3 PZA00925.2 PZA01791.2 PZB00761.1 PZA01861.1 PZA01062.1 PZA02545.1
1 9.0 9.0 9.0 9.0 9.0 9 9
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PZA03596.1 PZA00947.1 PZA01281.2 PZB01899.1 PZA00225.8 PZA00152.1 PZB01358.1
1 9.0 9.0 9.0 9.0 9.0 9.0 9.0
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PZA00015.5 PZA03470.1 PZA03235.1 PZA02613.1 PZA02325.4 PZA01819.1 PZA00840.1
1 9 9.0 9.0 9.0 9.0 9.0 9
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PZA00060.2 PZA00213.19 PHM3330.25 PHM4905.6 PZA01866.1 PZA02397.1 PZA02111.1
1 9.0 9.0 9.0 9.0 9.0 9.0 9.0
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PZA03670.1 PZA03671.1 PZA02235.14 PZA01096.1 PHM1766.1 PZA02252.2 PZA01369.1
1 9.0 9.0 9 9.0 9 9.0 9.0
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PHM816.29 PHM11226.13 PZB00221.3 PZD00055.1 PZA02197.1 PZA00323.3 PHM4604.18
1 9.0 9.0 9.0 9.0 9.0 9.0 9.0
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PZA01715.1.2 PZA00511.3 PZA02381.1 PZA00912.2 PHM4303.16 PZA00832.1
1 9.0 9.0 9.0 9.0 9.0 9.0
2 89.4 89.8 93.5 94.8 98.2 101.2
PHM15445.25 PZA00708.3 PHM1911.173 PHM13681.12 PZA03573.1 PZA02554.1
1 9.0 9 9.0 9.0 9.0 10
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PZA02221.20 PZA01313.2 PHM3631.47 PZA02095.10 PHM2828.83 PHM3765.7 PZA01883.2
1 10.0 10.0 10.0 10.0 10.0 10 10.0
2 0.2 5.9 8.9 15.2 21.3 24 24.8
PZA01451.1 PZB01301.5 PHM15331.16 PZA00463.3 PZA01642.1 PHM3896.9 PZA02961.6
1 10 10.0 10.0 10 10.0 10.0 10.0
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PHM3922.32 PZA00079.1 PZA02470.2 PZA02853.11 PZD00033.3 PZA03491.1 PZA01597.1
1 10.0 10.0 10.0 10.0 10 10.0 10.0
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PZA00409.17 PZA01677.1 PZA02941.7 PZA00933.3 PHM2770.19 PZA01877.2 PZB00409.6
1 10.0 10.0 10.0 10.0 10.0 10.0 10.0
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PZA00337.4 PHM12990.15 PZA00814.1 PZA01619.1 PZA00048.1 PZA00400.3 PZA02398.2
1 10.0 10.0 10.0 10.0 10.0 10 10.0
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PHM537.22 PHM12625.18 PHM18195.6 PZA00444.1 PZA01292.1 PZA01919.2 PZA02128.3
1 10.0 10.0 10.0 10.0 10.0 10.0 10.0
2 43.4 43.8 43.8 43.8 44.3 44.7 44.8
PZA01089.1 PHM4341.42 PZA02219.2 PHM13687.14 PZA01141.1 PZA03713.1 PZA03196.1
1 10.0 10.0 10.0 10.0 10.0 10 10.0
2 46.7 46.7 47.1 47.1 47.6 48 48.8
PZA00866.2 PZA01005.1 PZA00647.9 PZA01241.2 PZA02320.1 PZB01111.8 PZA01456.2
1 10 10.0 10.0 10.0 10.0 10.0 10.0
2 49 49.2 52.2 53.2 56.1 58.4 61.6
PHM18513.156 PHM15868.56 PZA02663.1 PZA01995.2 PZA03603.1 PZA03605.1
1 10 10.0 10.0 10.0 10.0 10.0
2 63 64.5 64.8 69.2 75.4 75.4
PZA03604.1 PZA03606.1 PZA03607.1 PZA00130.9 PZA02969.9 PZA02049.1 PZA00007.1
1 10.0 10.0 10.0 10.0 10.0 10.0 10.0
2 75.4 75.4 75.4 80.8 81.3 81.6 82.1
PHM5435.25 PZA01073.1 PZA02167.2 PZA01001.2 PZA02578.1 PZA00062.4 PZA02527.2
1 10.0 10.0 10.0 10 10.0 10.0 10.0
2 82.2 83.2 85.3 91 91.2 93.7 101.9
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