Nothing
if(isTRUE(getOption("covr"))){
context("significance_cases")
mtcars = NULL
rm(mtcars)
mtcars = datasets::mtcars
mtcars = apply_labels(mtcars,
mpg = "Miles/(US) gallon",
cyl = "Number of cylinders",
disp = "Displacement (cu.in.)",
hp = "Gross horsepower",
drat = "Rear axle ratio",
wt = "Weight (lb/1000)",
qsec = "1/4 mile time",
vs = "Engine",
vs = c("V-engine" = 0,
"Straight engine" = 1),
am = "Transmission",
am = c("Automatic" = 0,
"Manual"=1),
gear = "Number of forward gears",
carb = "Number of carburetors"
)
mtcars_table = cro_cases(list(mtcars$cyl, mtcars$gear),
list(total(), mtcars$vs, mtcars$am))
expss_digits(0)
# table(mtcars$cyl, mtcars$vs) %>% chisq.test()
expect_equal_to_reference(
significance_cases(mtcars_table),
"rds/significance_cases1.rds", update = TRUE
)
# table(mtcars$gear) %>% chisq.test()
expect_equal_to_reference(
significance_cases(mtcars_table, sig_level = 0.1),
"rds/significance_cases2.rds", update = TRUE
)
expect_equal_to_reference(
significance_cases(mtcars_table, sig_level = 0.1, min_base = 20),
"rds/significance_cases3.rds", update = TRUE
)
expect_equal_to_reference(
significance_cases(mtcars_table, sig_level = 0.1, keep = "none"),
"rds/significance_cases4.rds", update = TRUE
)
expect_equal_to_reference(
significance_cases(mtcars_table, sig_level = 0.1,
keep = "cases"),
"rds/significance_cases5.rds", update = TRUE
)
expect_equal_to_reference(
significance_cases(mtcars_table, sig_level = 0.1,
keep = "bases"),
"rds/significance_cases6.rds", update = TRUE
)
expect_equal_to_reference(
significance_cases(mtcars_table, sig_level = 0.1, digits = 3),
"rds/significance_cases7.rds", update = TRUE
)
expect_equal_to_reference(
significance_cases(mtcars_table[,1], sig_level = 0.1, keep = "none"),
"rds/significance_cases8.rds", update = TRUE
)
expect_equal_to_reference(
significance_cases(mtcars_table[,1], sig_level = 0.1,
keep = "cases"),
"rds/significance_cases9.rds", update = TRUE
)
expect_equal_to_reference(
significance_cases(mtcars_table[,1], sig_level = 0.1,
keep = "bases"),
"rds/significance_cases10.rds", update = TRUE
)
mtcars_table = cro_cases(list(mtcars$cyl, mtcars$gear),
list(total(), mtcars$vs, mtcars$am), total_row_position = "none")
# table(mtcars$cyl, mtcars$vs) %>% chisq.test()
expect_error(
significance_cases(mtcars_table)
)
mtcars_table = cro_cases(list(mtcars$cyl, mtcars$gear),
list(total(), mtcars$vs, mtcars$am), total_row_position = "above")
expect_equal_to_reference(
significance_cases(mtcars_table),
"rds/significance_cases11.rds", update = TRUE
)
mtcars_table = cro_cases(list(mtcars$cyl, mtcars$gear),
list(total(), mtcars$vs, mtcars$am), total_row_position = "above",
total_statistic = c("u_rpct", "u_cases"))
expect_equal_to_reference(
significance_cases(mtcars_table, total_row = 2),
"rds/significance_cases12.rds", update = TRUE
)
expect_equal_to_reference(
significance_cases(mtcars_table, total_row = 2, keep = "none", sig_level = 0.1),
"rds/significance_cases4.rds", update = TRUE
)
expect_equal_to_reference(
significance_cases(mtcars_table, total_row = 2, keep = "bases"),
"rds/significance_cases13.rds", update = TRUE
)
expect_equal_to_reference(
significance_cases(mtcars_table, total_row = 2, keep = "cases", sig_level = 0.1),
"rds/significance_cases14.rds", update = TRUE
)
expect_equal_to_reference(
significance_cases(mtcars_table, min_base = 20, total_row = 2, keep = "cases",
sig_level = 0.1),
"rds/significance_cases15.rds", update = TRUE
)
data(mtcars)
mtcars = apply_labels(mtcars,
mpg = "Miles/(US) gallon",
cyl = "Number of cylinders",
cyl = c("empty value" = 99),
disp = "Displacement (cu.in.)",
hp = "Gross horsepower",
drat = "Rear axle ratio",
wt = "Weight (lb/1000)",
qsec = "1/4 mile time",
vs = "Engine",
vs = c("V-engine" = 0,
"Straight engine" = 1,
Other = 98,
Unknown = 99),
am = "Transmission",
am = c("Automatic" = 0,
"Manual"=1),
gear = "Number of forward gears",
carb = "Number of carburetors"
)
mtcars_table = cro_cases(list(mtcars$cyl, mtcars$gear),
list(total(), mtcars$vs, mtcars$am))
expect_equal_to_reference(
significance_cases(mtcars_table),
"rds/significance_cases16.rds", update = TRUE
)
expect_equal_to_reference(
significance_cases(cro_cases(NA)),
"rds/significance_cases17.rds", update = TRUE
)
tbl = cross_cases(mtcars, am, vs) %>% drop_empty_columns()
correct_true = structure(list(row_labels = structure(c("Transmission|Automatic",
"Transmission|Manual", "Transmission|#Chi-squared p-value", "Transmission|#Total cases"
), class = "AsIs"), `Engine|V-engine` = structure(c("12.0", " 6.0",
"", "18.0"), class = "AsIs"), `Engine|Straight engine` = structure(c("7.0",
"7.0", "", "14.0"), class = "AsIs")), row.names = c("1", "2",
"3", "31"), class = c("etable", "data.frame"))
correct_false = structure(list(row_labels = structure(c("Transmission|Automatic",
"Transmission|Manual", "Transmission|#Chi-squared p-value", "Transmission|#Total cases"
), class = "AsIs"), `Engine|V-engine` = structure(c("12.0", " 6.0",
"<0.4", "18.0"), class = "AsIs"), `Engine|Straight engine` = structure(c("7.0",
"7.0", "", "14.0"), class = "AsIs")), row.names = c("1", "2",
"3", "31"), class = c("etable", "data.frame"))
# expect_equal(significance_cases(tbl, sig_level = 0.4, correct = TRUE), correct_true)
# expect_equal(significance_cases(tbl, sig_level = 0.4, correct = FALSE), correct_false)
expss_digits(NULL)
}
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