calcRstats: Calculate statistics of R per marker
In fitPoly: Genotype Calling for Bi-Allelic Marker Assays
calcRstats R Documentation
Calculate statistics of R per marker
Description
Calculate the min, max, mean and 50
for each marker
Usage
calcRstats(datpoly, out)
Arguments
datpoly
a data frame in long format (input format for fitPoly)
with at least columns MarkerName, SampleName, R
out
name of output file; if NA no file is written. File contains
the same data as the return value
Details
The data.frame returned by this function is used as input for
function selMarkers_byR
Value
a data frame with columns MarkerName, mean, min, q50, q95, max
which are all statistics of the R values per marker
fitPoly documentation built on April 3, 2025, 8:58 p.m.
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| calcRstats | R Documentation |
Calculate statistics of R per marker
Description
Calculate the min, max, mean and 50 for each marker
Usage
calcRstats(datpoly, out)
Arguments
datpoly |
a data frame in long format (input format for fitPoly) with at least columns MarkerName, SampleName, R |
out |
name of output file; if NA no file is written. File contains the same data as the return value |
Details
The data.frame returned by this function is used as input for function selMarkers_byR
Value
a data frame with columns MarkerName, mean, min, q50, q95, max which are all statistics of the R values per marker
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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