fitPoly: fitPoly: a package for assigning dosage scores based on SNP...
In fitPoly: Genotype Calling for Bi-Allelic Marker Assays
Description
fitPoly (an evolved version of package fitTetra) fits mixture models to
the distribution of intensity ratios Y/(X+Y) (where X and Y are the
intensities of the signals produced by the A and B alleles of bi-allelic
markers) and uses these to assign genotypes (dosages).
The main differences compared with fitTetra are that it can handle
any ploidy level, and multiple populations that can be either F1 populations
(and their parents) or panels of accessions. There are also improvements
in accuracy, speed and the possibility to use prior dosage information.
fitPoly documentation built on May 2, 2019, 6:13 a.m.
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Description
fitPoly (an evolved version of package fitTetra) fits mixture models to the distribution of intensity ratios Y/(X+Y) (where X and Y are the intensities of the signals produced by the A and B alleles of bi-allelic markers) and uses these to assign genotypes (dosages). The main differences compared with fitTetra are that it can handle any ploidy level, and multiple populations that can be either F1 populations (and their parents) or panels of accessions. There are also improvements in accuracy, speed and the possibility to use prior dosage information.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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