scores: A data set with dosage scores generated by fitPoly
In fitPoly: Genotype Calling for Bi-Allelic Marker Assays
scores R Documentation
A data set with dosage scores generated by fitPoly
Description
A data frame as saved by function fitMarkers in package
fitPoly
Usage
data(scores)
Details
scores contains the following columns:
marker: numeric, the sequential number of the markers in the
fitMarkers input file
MarkerName: factor, names of the markers (SNPs)
SampleName: factor names of the individuals / DNA samples
ratio: numeric, the ratios of the Y signal to the total signal
intensity
P0 ... P4: numeric, the probabilities that the observed signal ratio
reflects a true Y allele dosage of 0 ... 4, according to the selected
mixture model
maxgeno: numeric, the dosage with the maximum probability
maxP: numeric, the maximum probability, i.e. the probability of maxgeno
geno: numeric, equal to maxgeno if maxP was above the specified threshold
(p.threshold=0.99), else NA
fitPoly documentation built on April 3, 2025, 8:58 p.m.
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| scores | R Documentation |
A data set with dosage scores generated by fitPoly
Description
A data frame as saved by function fitMarkers in package fitPoly
Usage
data(scores)
Details
scores contains the following columns:
marker: numeric, the sequential number of the markers in the fitMarkers input file
MarkerName: factor, names of the markers (SNPs)
SampleName: factor names of the individuals / DNA samples
ratio: numeric, the ratios of the Y signal to the total signal intensity
P0 ... P4: numeric, the probabilities that the observed signal ratio reflects a true Y allele dosage of 0 ... 4, according to the selected mixture model
maxgeno: numeric, the dosage with the maximum probability
maxP: numeric, the maximum probability, i.e. the probability of maxgeno
geno: numeric, equal to maxgeno if maxP was above the specified threshold (p.threshold=0.99), else NA
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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