selSegtypeInfo: Restrict a list of segregation types to specified inheritance...
In fitPoly: Genotype Calling for Bi-Allelic Marker Assays

selSegtypeInfo

R Documentation

Restrict a list of segregation types to specified inheritance modes

Description

From a list of segregation types as produced by calcSegtypeInfo, this function selects only those segtypes that occur with polysomic, disomic and/or mixed inheritance if the corresponding parameters are set to TRUE, and from those segtypes only the parental dosages with the same restrictions are retained.

Usage

selSegtypeInfo(segtypeInfo, polysomic, disomic, mixed,
selfing=FALSE)

Arguments

`segtypeInfo`	a list as returned by calcSegtypeInfo
`polysomic`	If TRUE all segtypes with poly TRUE are retained, and from those segtypes all parental dosage combinations with parmode[,1] TRUE
`disomic`	If TRUE all segtypes with di TRUE are retained, and from those segtypes all parental dosage combinations with parmode[,2] TRUE
`mixed`	If TRUE all segtypes with mixed TRUE are retained, and from those segtypes all parental dosage combinations with parmode[,3] TRUE
`selfing`	if TRUE only segtypes are retained that can be the result of a selfing, i.e. both parental dosages equal (although it allows disomic segtypes where the parental distribution of alleles over the subgenomes is different, e.g. aa/bb x ab/ab -> 121_1); default FALSE