writeDatfile: User-friendly wrapper for write.table

In fitPoly: Genotype Calling for Bi-Allelic Marker Assays

User-friendly wrapper for write.table

Description

A wrapper for write.table that has default parameter values for writing tab-separated files as used in packages fitPoly and fitPolyTools

Usage

writeDatfile(x, file, quote=FALSE, sep="\t", na="",
row.names=FALSE, col.names=TRUE, logical_01=FALSE, ...)

Arguments

x	the object to be written, preferably a matrix or data frame. If not, it is attempted to coerce x to a data frame.
file	either a character string naming a file or a connection open for writing. "" indicates output to the console.
quote	a logical value (TRUE or FALSE) or a numeric vector. If TRUE, any character or factor columns will be surrounded by double quotes. If a numeric vector, its elements are taken as the indices of columns to quote. In both cases, row and column names are quoted if they are written. If FALSE (default), nothing is quoted.
sep	the field separator string. Values within each row of x are separated by this string.
na	the string to use for missing values in the data
row.names	either a logical value indicating whether the row names of x are to be written along with x, or a character vector of row names to be written.
col.names	either a logical value indicating whether the column names of x are to be written along with x, or a character vector of column names to be written.
logical_01	FALSE (default) or TRUE; if TRUE, logical columns of x are converted to 0/1/NA numeric values before writing the file
...	Further arguments to be passed to write.table

fitPoly documentation built on April 3, 2025, 8:58 p.m.