View source: R/findExclusions.R
findExclusions | R Documentation |
Find markers for which the genotypes of a candidate individual is incompatible with a pedigree
findExclusions(x, id, candidate, removeMut = TRUE)
x |
A |
id |
A character of length 1; the name of an untyped member of |
candidate |
A singleton pedigree, with genotypes for the same markers as |
removeMut |
A logical. If TRUE (default), all mutations models are stripped. |
A character vector containing the names of incompatible markers.
# Pedigree with 3 siblings; simulate data for first two x = nuclearPed(3) |> setMarkers(locusAttributes = NorwegianFrequencies[1:5]) |> profileSim(ids = 3:4, seed = 1) # Simulate random person poi = singleton(1) |> setMarkers(locusAttributes = NorwegianFrequencies[1:5]) |> profileSim(seed = 1) # Identify incompatible markers findExclusions(x, id = 5, candidate = poi) # D21S11 # Inspect plotPedList(c(x, poi), marker = "D21S11", frames = FALSE)
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