construct_subj_dir: Construct Subject Directory
In freesurfer: Wrapper Functions for 'Freesurfer'

construct_subj_dir

R Documentation

Construct Subject Directory

Description

This function copies files specified by the types of data, determined by the folder Freesurfer put them in, into a temporary directory for easier separation of data and different structuring of data.

Usage

construct_subj_dir(
  label = NULL,
  mri = NULL,
  stats = NULL,
  surf = NULL,
  touch = NULL,
  subj = NULL,
  subj_root_dir = tempdir()
)

Arguments

`label`	Files to copy to `subj_root_dir/subj/label` folder
`mri`	Files to copy to `subj_root_dir/subj/mri` folder
`stats`	Files to copy to `subj_root_dir/subj/stats` folder
`surf`	Files to copy to `subj_root_dir/subj/surf` folder
`touch`	Files to copy to `subj_root_dir/subj/touch` folder
`subj`	Name of subject to make folder for to use for Freesurfer functions. If `NULL`, a temporary id will be generated
`subj_root_dir`	Directory to put folder with contents of `subj`

Value

List with the subject name, the SUBJECTS_DIR to use (the directory that contains the subject name), and the types of objects copied

Examples

## Not run: 
library(freesurfer)
label = "/Applications/freesurfer/subjects/bert/label/aparc.annot.a2009s.ctab"
mri = c(
  "/Applications/freesurfer/subjects/bert/mri/aparc.a2009s+aseg.mgz",
  "/Applications/freesurfer/subjects/bert/mri/aseg.auto.mgz")
stats = c("/Applications/freesurfer/subjects/bert/stats/lh.aparc.stats",
          "/Applications/freesurfer/subjects/bert/stats/aseg.stats")
surf = "/Applications/freesurfer/subjects/bert/surf/lh.thickness"
touch = NULL

## End(Not run)

freesurfer documentation built on June 8, 2025, 10:17 a.m.