mri_surf2surf: Use Freesurfers 'mri_surf2surf' function to resamples one...

In freesurfer: Wrapper Functions for 'Freesurfer'

Description

This function calls Freesurfer mri_surf2surf to resample one cortical surface onto another

Usage

mri_surf2surf(
  subject = NULL,
  target_subject = NULL,
  trg_type = c("curv", "w", "mgh", "nii"),
  src_type = c("curv", "w"),
  outfile = NULL,
  hemi = c("lh", "rh"),
  sval = c("thickness"),
  subj_dir = NULL,
  opts = "",
  verbose = TRUE
)

Arguments

subject	(character) vector of subject name
target_subject	(character) vector of target subject name
trg_type	(character) target file type, can be curv, paint (w), mgh, or nii
src_type	(character) source file type, can be curv or paint (w)
outfile	(character) output filename
hemi	(character) hemisphere to run statistics
sval	(character) source file
subj_dir	(character path) if a different subjects directory is to be used other than SUBJECTS_DIR from shell, it can be specified here. Use with care as if the command fail, it may not reset the SUBJECTS_DIR back correctly after the error
opts	(character) additional options to mri_surf2surf
verbose	(logical) print diagnostic messages

Value

Name of output file

Examples

if (have_fs()) {
   out = mri_surf2surf( 
   subject = 'bert',
   target_subject = 'fsaverage', 
   trg_type  = 'curv', 
   src_type  = 'curv', 
   hemi = "rh",
   sval = "thickness")
} 

Example output

freesurfer documentation built on Dec. 9, 2020, 1:07 a.m.