mnc2nii: Convert MNC to NIfTI
In freesurfer: Wrapper Functions for 'Freesurfer'

mnc2nii

R Documentation

Convert MNC to NIfTI

Description

This function calls mnc2nii to convert MNC files to NIfTI

Usage

mnc2nii(file, outfile = NULL, ...)

Arguments

`file`	(character) input filename
`outfile`	(character) output filename
`...`	Additional arguments to pass to `fs_cmd`

Value

Character filename of output

Examples

if (have_fs() && requireNamespace("oro.nifti", quietly = TRUE)) {
   img = oro.nifti::nifti(array(rnorm(5*5*5), dim = c(5,5,5)))
   mnc = nii2mnc(img)
   img_file = mnc2nii(mnc, outfile = tempfile(fileext = ".nii"))
   neurobase::readnii(img_file, verbose = TRUE)
}

freesurfer documentation built on June 8, 2025, 10:17 a.m.