mri_segment: Use Freesurfers MRI Segmentation Algorithm

In freesurfer: Wrapper Functions for 'Freesurfer'

Description

This function calls mri_segment to segment tissues from an image

Usage

mri_segment(file, outfile = NULL, retimg = TRUE, opts = "", ...)

Arguments

file	(character) input filename
outfile	(character) output filename
retimg	(logical) return image of class nifti
opts	(character) additional options to mri_segment
...	additional arguments passed to fs_cmd.

Value

Character or nifti depending on retimg

Note

NOT COMPLETE

Examples

## Not run: 
if (have_fs()){
    mri_segment("/path/to/T1.nii.gz")
} 

## End(Not run) 

Example output

freesurfer documentation built on Dec. 9, 2020, 1:07 a.m.