fslchfiletype: FSL Change file type

In fslr: Wrapper Functions for 'FSL' ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')

FSL Change file type

Description

This function calls fslchfiletype

Usage

fslchfiletype(
  file,
  filetype = "NIFTI_GZ",
  outfile = NULL,
  retimg = TRUE,
  reorient = FALSE,
  intern = FALSE,
  verbose = TRUE,
  ...
)

Arguments

file	(character) image to be manipulated
filetype	filetype to change image to
outfile	Output filename. If NULL, will overwrite input file
retimg	(logical) return image of class nifti
reorient	(logical) If retimg, should file be reoriented when read in? Passed to readnii.
intern	(logical) to be passed to system
verbose	(logical) print out command before running
...	additional arguments passed to readnii.

Value

If retimg then object of class nifti. Otherwise, Result from system command, depends if intern is TRUE or FALSE.

fslr documentation built on Aug. 25, 2022, 5:07 p.m.