fslcog: Image Center of Gravity (FSL)

In fslr: Wrapper Functions for 'FSL' ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')

Image Center of Gravity (FSL)

Description

Find Center of Gravity of Image from FSL

Usage

fslcog(img, mm = TRUE, verbose = TRUE, ts = FALSE)

Arguments

img	Object of class nifti, or path of file
mm	Logical if the center of gravity (COG) would be in mm (default TRUE) or voxels (FALSE)
verbose	(logical) print out command before running
ts	(logical) is the series a timeseries (4D), invoking -t option

Value

Vector of length 3 unless ts option invoked

Note

FSL uses a 0-based indexing system, which will give you a different answer compared to cog, but fslcog(img, mm = FALSE) +1 should be relatively close to cog(img)

Examples

if (have.fsl()){
x = array(rnorm(1e6), dim = c(100, 100, 100))
img = nifti(x, dim= c(100, 100, 100), 
datatype = convert.datatype()$FLOAT32, cal.min = min(x), 
cal.max = max(x), pixdim = rep(1, 4))
fslcog(img)
}

fslr documentation built on May 29, 2024, 2:31 a.m.