Merge images using FSL

Description

This function calls fslmerge to merge files on some dimension and either saves the image or returns an object of class nifti

Usage

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fslmerge(infiles, direction = c("x", "y", "z", "t", "a"), outfile = NULL,
  retimg = TRUE, reorient = FALSE, intern = FALSE, verbose = TRUE, ...)

Arguments

infiles

(character) input filenames

direction

(character) direction to merge over, x, y, z, t (time), a (auto)

outfile

(character) output filename

retimg

(logical) return image of class nifti

reorient

(logical) If retimg, should file be reoriented when read in? Passed to readnii.

intern

(logical) pass to system

verbose

(logical) print out command before running

...

additional arguments passed to readnii.

Value

character or logical depending on intern

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