run_first_all: Run FIRST All

In fslr: Wrapper Functions for 'FSL' ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')

Run FIRST All

Description

Wrapper for run_first_all from FSL for FIRST analysis segmentation of subcortical structures

Usage

run_first_all(
  img,
  oprefix = tempfile(),
  brain_extracted = FALSE,
  structures = NULL,
  affine = NULL,
  opts = "",
  verbose = TRUE
)

Arguments

img	specifies the input image (T1-weighted)
oprefix	specifies the output image basename (extensions will be added to this)
brain_extracted	specifies that the input image has been brain extracted
structures	a restricted set of structures to be segmented
affine	specifies the affine registration matrix to standard space (optional)
opts	(character) operations to be passed to run_first_all
verbose	(logical) print out command before running

Value

List of results, including result of system and some output files

fslr documentation built on Aug. 25, 2022, 5:07 p.m.