Files in geneHapR

Gene Haplotype Statistics, Phenotype Association and Visualization

R/hap2table.R R/NN2AA.R R/vis_functionalSites.R R/print.R R/hap2hmp.R R/getGenePOS.R R/hap2seqs.R R/adj_setATGas0.R R/hap2plink.R R/vis_geography.R R/GUI_geneHapR.R R/vis_LDheatmap.R R/data.R R/vis_gridplothaptable2.R R/anno.R R/vis_network.R R/hap2vcf.R R/vis_phenos.R R/geneHapR-package.R R/IO.R R/filter.R R/filter_preprocessbigVCF.R R/Merge.R R/zzz.R R/adj_addINFO.R R/vis_hapVisualization.R R/lolliplot.R inst/doc/Introduction_of_geneHapR.R inst/doc/Introduction_of_geneHapR.Rmd tests/testthat.R tests/testthat/test_plot.R vignettes/Introduction_of_geneHapR.Rmd man/hap_summary.Rd man/hapDistribution.Rd man/filter_hmp.Rd man/import_gff.Rd man/import_AccINFO.Rd man/sites_compar.Rd man/vcf2hap.Rd man/geneHapR-package.Rd man/filter_hap.Rd man/hapVsPhenoPerSite.Rd man/SetATGas0.Rd man/addINFO.Rd man/plotEFF.Rd man/hapVsPheno.Rd man/getGenePOS.Rd man/write.hap.Rd man/seqs2hap.Rd man/import_bed.Rd man/import_seqs.Rd man/import_MultipleAlignment.Rd man/filter_vcf.Rd man/filter_plink.pedmap.Rd man/plotHapTable2.Rd man/import_hap.Rd man/getGeneRanges.Rd man/filter_table.Rd man/ashaplotype.Rd man/plotHapNet.Rd man/filterLargep.link.Rd man/siteEFF.Rd man/plotHapTable.Rd man/filterLargeVCF.Rd man/LDheatmap.Rd man/import_plink.pedmap.Rd man/import_vcf.Rd man/hap2hmp.Rd man/plink.pedmap2hap.Rd man/DataSet.Rd man/hapVsPhenos.Rd man/addPromoter.Rd man/table2hap.Rd man/network.Rd man/displayVarOnGeneModel.Rd