SNPs-Genes annotation to Distance 0 (SNPs within a gene)

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Description

SNPs annotated to genes. Annotation only when the SNPs fall within start and end of transcription of the genes.

Usage

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Format

Sample data frame with 339096 SNP observations on the following 6 variables.

name

a character vector

Chromosome

a character vector

Location

a numeric vector of the SNP location

GENE_ID

a numeric vector with entrez geneID

Symbol

a character vector ; other annotation slot 1

Orientation

a character vector; other annotation slot 2

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	name      Chromosome  Location  GENE_ID    Symbol     Orientation
	rs1000313          1  15405489    23254    KIAA1026             +
	rs1000533          1 168282491     9095    TBX19                +
	rs1000731          1 231963491    27185    DISC1                +
	

Source

NCBI Gene database,(http://www.ncbi.nlm.nih.gov/gene ; Build.37.1).

Examples

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# data(SNPsAnnotation)