SNPsAnnotation: SNPs-Genes annotation to Distance 0 (SNPs within a gene)

In genomicper: Circular Genomic Permutation using Genome Wide Association p-Values

Description

SNPs annotated to genes. Annotation only when the SNPs fall within start and end of transcription of the genes.

Usage

data(SNPsAnnotation)

Format

Sample data frame with 339096 SNP observations on the following 6 variables.

name

a character vector

Chromosome

a character vector

Location

a numeric vector of the SNP location

GENE_ID

a numeric vector with entrez geneID

Symbol

a character vector ; other annotation slot 1

Orientation

a character vector; other annotation slot 2

	name      Chromosome  Location  GENE_ID    Symbol     Orientation
	rs1000313          1  15405489    23254    KIAA1026             +
	rs1000533          1 168282491     9095    TBX19                +
	rs1000731          1 231963491    27185    DISC1                +
	

Source

NCBI Gene database,(http://www.ncbi.nlm.nih.gov/gene ; Build.37.1).

Examples

data(SNPsAnnotation)

genomicper documentation built on May 8, 2021, 9:06 a.m.