demo: GWAS p_values demo data

In genomicper: Circular Genomic Permutation using Gwas p-Values of Association

Description

GWAS p-values (tab delimited file). First Column must contain the SNP ids and the column name = "name"

Usage

data(demo)

Format

A data frame with SNPs identifiers and gwas p-values of association

name

a character vector

abpi

a numeric vector

abpilba

a numeric vector

abpildfa

a numeric vector

abpilpta

a numeric vector

abpirba

a numeric vector

abpirdfa

a numeric vector

abpirpta

a numeric vector

alb

a numeric vector

avdbp

a numeric vector

	name       abpi      abpilba    abpildfa  abpilpta  abpirba   abpirdfa
	rs10000010 0.9122360 0.30088096 0.2332038 0.5193068 0.1255104 0.07253145 
	rs10000023 0.8642906 0.52064064 0.9243443 0.7177759 0.9512171 0.81716250 
	rs10000030 0.2832705 0.99021664 0.8359339 0.9662707 0.8491221 0.50208681 

  

Examples

# data(demo)
## use: input file for "read_pvals" function

genomicper documentation built on May 29, 2017, 11:34 a.m.

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Gene-level Permutations