ggRandomForests: Visually Exploring Random Forests

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Graphic elements for exploring Random Forests using the 'randomForest' or 'randomForestSRC' package for survival, regression and classification forests and 'ggplot2' package plotting.

Author
John Ehrlinger <john.ehrlinger@gmail.com>
Date of publication
2016-09-07 23:21:30
Maintainer
John Ehrlinger <john.ehrlinger@gmail.com>
License
GPL (>= 3)
Version
2.0.1
URLs

View on CRAN

Man pages

cache_rfsrc_datasets
Recreate the cached data sets for the ggRandomForests package
calc_auc
Area Under the ROC Curve calculator
calc_roc.rfsrc
Reciever Operator Characteristic calculator
combine.gg_partial
combine two gg_partial objects
gg_error
randomForestSRC error rate data object
gg_interaction
Minimal Depth Variable Interaction data object...
gg_minimal_depth
Minimal depth data object ('[randomForestSRC]{var.select}')
gg_minimal_vimp
Minimal depth vs VIMP camparison by variable rankings.
gg_partial
Partial variable dependence object
gg_partial_coplot.rfsrc
Data structures for stratified partial coplots
ggRandomForests-package
ggRandomForests: Visually Exploring Random Forests
gg_rfsrc.rfsrc
Predicted response data object
gg_roc.rfsrc
ROC (Receiver operator curve) data from a classification...
gg_survival
Nonparametric survival estimates.
gg_variable
Marginal variable depedance data object.
gg_vimp
Variable Importance (VIMP) data object
kaplan
nonparametric kaplan-meier estimates
logit_loess
logit_loess takes
nelson
nonparametric Nelson-Aalen estimates
partial.rfsrc
randomForestSRC partial dependence (data object) (modified...
plot.gg_error
Plot a 'gg_error' object
plot.gg_interaction
plot.gg_interaction Plot a 'gg_interaction' object,
plot.gg_minimal_depth
Plot a 'gg_minimal_depth' object for random forest variable...
plot.gg_minimal_vimp
Plot a 'gg_minimal_vimp' object for comparing the Minimal...
plot.gg_partial
Partial variable dependence plot, operates on a 'gg_partial'...
plot.gg_partial_list
Partial variable dependence plot, operates on a...
plot.gg_rfsrc
Predicted response plot from a 'gg_rfsrc' object.
plot.gg_roc
ROC plot generic function for a 'gg_roc' object.
plot.gg_survival
Plot a 'gg_survival' object.
plot.gg_variable
Plot a 'gg_variable' object,
plot.gg_vimp
Plot a 'gg_vimp' object, extracted variable importance of a...
print.gg_minimal_depth
Print a 'gg_minimal_depth' object.
quantile_pts
Find points evenly distributed along the vectors values.
shift
lead function to shift by one (or more).
surface_matrix
Construct a set of (x, y, z) matrices for surface plotting a...

Files in this package

ggRandomForests
ggRandomForests/NAMESPACE
ggRandomForests/NEWS
ggRandomForests/R
ggRandomForests/R/plot.gg_minimal_vimp.R
ggRandomForests/R/gg_variable.R
ggRandomForests/R/plot.gg_rfsrc.R
ggRandomForests/R/gg_error.R
ggRandomForests/R/quantile_pts.R
ggRandomForests/R/logit_loess.R
ggRandomForests/R/plot.gg_vimp.R
ggRandomForests/R/gg_vimp.R
ggRandomForests/R/gg_minimal_depth.R
ggRandomForests/R/calc_roc.R
ggRandomForests/R/plot.gg_partial.R
ggRandomForests/R/plot.gg_minimal_depth.R
ggRandomForests/R/plot.gg_survival.R
ggRandomForests/R/gg_interaction.R
ggRandomForests/R/partial.rfsrc.R
ggRandomForests/R/plot.gg_variable.R
ggRandomForests/R/cache_rfsrc_datasets.R
ggRandomForests/R/gg_survival.R
ggRandomForests/R/plot.gg_partial_list.R
ggRandomForests/R/plot.gg_error.R
ggRandomForests/R/gg_minimal_vimp.R
ggRandomForests/R/nelson.R
ggRandomForests/R/plot.gg_interaction.R
ggRandomForests/R/combine.gg_partial.R
ggRandomForests/R/help.R
ggRandomForests/R/print.gg_minimal_depth.R
ggRandomForests/R/plot.gg_roc.R
ggRandomForests/R/kaplan.R
ggRandomForests/R/surface_matrix.gg_partial_coplot.R
ggRandomForests/R/gg_partial.R
ggRandomForests/R/gg_roc.R
ggRandomForests/R/gg_rfsrc.R
ggRandomForests/R/gg_partial_coplot.R
ggRandomForests/README.md
ggRandomForests/MD5
ggRandomForests/DESCRIPTION
ggRandomForests/man
ggRandomForests/man/plot.gg_roc.Rd
ggRandomForests/man/gg_roc.rfsrc.Rd
ggRandomForests/man/kaplan.Rd
ggRandomForests/man/quantile_pts.Rd
ggRandomForests/man/print.gg_minimal_depth.Rd
ggRandomForests/man/shift.Rd
ggRandomForests/man/gg_error.Rd
ggRandomForests/man/calc_roc.rfsrc.Rd
ggRandomForests/man/logit_loess.Rd
ggRandomForests/man/gg_survival.Rd
ggRandomForests/man/plot.gg_rfsrc.Rd
ggRandomForests/man/ggRandomForests-package.Rd
ggRandomForests/man/gg_interaction.Rd
ggRandomForests/man/partial.rfsrc.Rd
ggRandomForests/man/gg_partial.Rd
ggRandomForests/man/gg_partial_coplot.rfsrc.Rd
ggRandomForests/man/cache_rfsrc_datasets.Rd
ggRandomForests/man/calc_auc.Rd
ggRandomForests/man/nelson.Rd
ggRandomForests/man/surface_matrix.Rd
ggRandomForests/man/plot.gg_minimal_depth.Rd
ggRandomForests/man/plot.gg_error.Rd
ggRandomForests/man/combine.gg_partial.Rd
ggRandomForests/man/gg_minimal_depth.Rd
ggRandomForests/man/plot.gg_interaction.Rd
ggRandomForests/man/plot.gg_minimal_vimp.Rd
ggRandomForests/man/gg_variable.Rd
ggRandomForests/man/plot.gg_variable.Rd
ggRandomForests/man/plot.gg_survival.Rd
ggRandomForests/man/gg_vimp.Rd
ggRandomForests/man/plot.gg_partial_list.Rd
ggRandomForests/man/gg_rfsrc.rfsrc.Rd
ggRandomForests/man/gg_minimal_vimp.Rd
ggRandomForests/man/plot.gg_partial.Rd
ggRandomForests/man/plot.gg_vimp.Rd
ggRandomForests/.Rinstignore