ggRandomForests: Visually Exploring Random Forests
Version 2.0.1

Graphic elements for exploring Random Forests using the 'randomForest' or 'randomForestSRC' package for survival, regression and classification forests and 'ggplot2' package plotting.

AuthorJohn Ehrlinger <john.ehrlinger@gmail.com>
Date of publication2016-09-07 23:21:30
MaintainerJohn Ehrlinger <john.ehrlinger@gmail.com>
LicenseGPL (>= 3)
Version2.0.1
URL https://github.com/ehrlinger/ggRandomForests
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("ggRandomForests")

Getting started

Package overview
README.md

Popular man pages

gg_error: randomForestSRC error rate data object
ggRandomForests-package: ggRandomForests: Visually Exploring Random Forests
gg_variable: Marginal variable depedance data object.
gg_vimp: Variable Importance (VIMP) data object
kaplan: nonparametric kaplan-meier estimates
partial.rfsrc: randomForestSRC partial dependence (data object) (modified...
plot.gg_minimal_depth: Plot a 'gg_minimal_depth' object for random forest variable...
See all...

All man pages Function index File listing

Man pages

cache_rfsrc_datasets: Recreate the cached data sets for the ggRandomForests package
calc_auc: Area Under the ROC Curve calculator
calc_roc.rfsrc: Reciever Operator Characteristic calculator
combine.gg_partial: combine two gg_partial objects
gg_error: randomForestSRC error rate data object
gg_interaction: Minimal Depth Variable Interaction data object...
gg_minimal_depth: Minimal depth data object ('[randomForestSRC]{var.select}')
gg_minimal_vimp: Minimal depth vs VIMP camparison by variable rankings.
gg_partial: Partial variable dependence object
gg_partial_coplot.rfsrc: Data structures for stratified partial coplots
ggRandomForests-package: ggRandomForests: Visually Exploring Random Forests
gg_rfsrc.rfsrc: Predicted response data object
gg_roc.rfsrc: ROC (Receiver operator curve) data from a classification...
gg_survival: Nonparametric survival estimates.
gg_variable: Marginal variable depedance data object.
gg_vimp: Variable Importance (VIMP) data object
kaplan: nonparametric kaplan-meier estimates
logit_loess: logit_loess takes
nelson: nonparametric Nelson-Aalen estimates
partial.rfsrc: randomForestSRC partial dependence (data object) (modified...
plot.gg_error: Plot a 'gg_error' object
plot.gg_interaction: plot.gg_interaction Plot a 'gg_interaction' object,
plot.gg_minimal_depth: Plot a 'gg_minimal_depth' object for random forest variable...
plot.gg_minimal_vimp: Plot a 'gg_minimal_vimp' object for comparing the Minimal...
plot.gg_partial: Partial variable dependence plot, operates on a 'gg_partial'...
plot.gg_partial_list: Partial variable dependence plot, operates on a...
plot.gg_rfsrc: Predicted response plot from a 'gg_rfsrc' object.
plot.gg_roc: ROC plot generic function for a 'gg_roc' object.
plot.gg_survival: Plot a 'gg_survival' object.
plot.gg_variable: Plot a 'gg_variable' object,
plot.gg_vimp: Plot a 'gg_vimp' object, extracted variable importance of a...
print.gg_minimal_depth: Print a 'gg_minimal_depth' object.
quantile_pts: Find points evenly distributed along the vectors values.
shift: lead function to shift by one (or more).
surface_matrix: Construct a set of (x, y, z) matrices for surface plotting a...

Functions

bayes.rule Source code
bootstrap_survival Source code
cache_rfsrc_datasets Man page Source code
calc_auc Man page Source code
calc_auc.gg_roc Man page
calc_roc Man page
calc_roc.randomForest Man page
calc_roc.rfsrc Man page Source code
combine.gg_partial Man page Source code
combine.gg_partial_list Man page Source code
extract.pred Source code
get.event.info Source code
ggRandomForests-package Man page
gg_error Man page Source code
gg_error.randomForest Man page Source code
gg_error.randomForest.formula Man page
gg_error.rfsrc Man page Source code
gg_interaction Man page Source code
gg_interaction.randomForest Source code
gg_interaction.rfsrc Source code
gg_minimal_depth Man page Source code
gg_minimal_depth.randomForest Source code
gg_minimal_depth.rfsrc Man page Source code
gg_minimal_vimp Man page Source code
gg_minimal_vimp.randomForest Man page Source code
gg_minimal_vimp.rfsrc Man page Source code
gg_partial Man page Source code
gg_partial.randomForest Man page Source code
gg_partial.rfsrc Man page Source code
gg_partial_coplot Man page Source code
gg_partial_coplot.randomForest Source code
gg_partial_coplot.rfsrc Man page Source code
gg_partial_list Man page
gg_rfsrc Man page Source code
gg_rfsrc.randomForest Source code
gg_rfsrc.rfsrc Man page Source code
gg_roc Man page Source code
gg_roc.randomForest Man page Source code
gg_roc.rfsrc Man page Source code
gg_survival Man page Source code
gg_variable Man page Source code
gg_variable.randomForest Source code
gg_variable.rfsrc Man page Source code
gg_vimp Man page Source code
gg_vimp.randomForest Man page Source code
gg_vimp.randomForest.formula Man page
gg_vimp.rfsrc Man page Source code
kaplan Man page Source code
logit_loess Man page Source code
nelson Man page Source code
partial.rfsrc Man page Source code
plot.gg_error Man page Source code
plot.gg_interaction Man page Source code
plot.gg_minimal_depth Man page Source code
plot.gg_minimal_vimp Man page Source code
plot.gg_partial Man page Source code
plot.gg_partial_list Man page Source code
plot.gg_rfsrc Man page Source code
plot.gg_roc Man page Source code
plot.gg_survival Man page Source code
plot.gg_variable Man page Source code
plot.gg_vimp Man page Source code
print.gg_minimal_depth Man page Source code
quantile_pts Man page Source code
resample Source code
shift Man page Source code
surface_matrix Man page Source code
surface_matrix.gg_partial_coplot Man page

Files

NAMESPACE
NEWS
R
R/plot.gg_minimal_vimp.R
R/gg_variable.R
R/plot.gg_rfsrc.R
R/gg_error.R
R/quantile_pts.R
R/logit_loess.R
R/plot.gg_vimp.R
R/gg_vimp.R
R/gg_minimal_depth.R
R/calc_roc.R
R/plot.gg_partial.R
R/plot.gg_minimal_depth.R
R/plot.gg_survival.R
R/gg_interaction.R
R/partial.rfsrc.R
R/plot.gg_variable.R
R/cache_rfsrc_datasets.R
R/gg_survival.R
R/plot.gg_partial_list.R
R/plot.gg_error.R
R/gg_minimal_vimp.R
R/nelson.R
R/plot.gg_interaction.R
R/combine.gg_partial.R
R/help.R
R/print.gg_minimal_depth.R
R/plot.gg_roc.R
R/kaplan.R
R/surface_matrix.gg_partial_coplot.R
R/gg_partial.R
R/gg_roc.R
R/gg_rfsrc.R
R/gg_partial_coplot.R
README.md
MD5
DESCRIPTION
man
man/plot.gg_roc.Rd
man/gg_roc.rfsrc.Rd
man/kaplan.Rd
man/quantile_pts.Rd
man/print.gg_minimal_depth.Rd
man/shift.Rd
man/gg_error.Rd
man/calc_roc.rfsrc.Rd
man/logit_loess.Rd
man/gg_survival.Rd
man/plot.gg_rfsrc.Rd
man/ggRandomForests-package.Rd
man/gg_interaction.Rd
man/partial.rfsrc.Rd
man/gg_partial.Rd
man/gg_partial_coplot.rfsrc.Rd
man/cache_rfsrc_datasets.Rd
man/calc_auc.Rd
man/nelson.Rd
man/surface_matrix.Rd
man/plot.gg_minimal_depth.Rd
man/plot.gg_error.Rd
man/combine.gg_partial.Rd
man/gg_minimal_depth.Rd
man/plot.gg_interaction.Rd
man/plot.gg_minimal_vimp.Rd
man/gg_variable.Rd
man/plot.gg_variable.Rd
man/plot.gg_survival.Rd
man/gg_vimp.Rd
man/plot.gg_partial_list.Rd
man/gg_rfsrc.rfsrc.Rd
man/gg_minimal_vimp.Rd
man/plot.gg_partial.Rd
man/plot.gg_vimp.Rd
.Rinstignore
ggRandomForests documentation built on May 19, 2017, 3:36 p.m.

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