Description Usage Arguments Value Author(s)
Plots nucleltide secondary structure as helices in arc diagram
1 |
helix_data |
a data frame. The file of nucleltide secondary structure and then read by ggmsa::readSSfile. |
color_by |
generate colors for helices by various rules, including integer counts and value ranges one of "length" and "value" |
overlap |
Logicals. If TRUE, two structures data called predict and known must be given(eg:heilx_data = list(known = data1, predicted = data2)), plots the predicted helices that are known on top, predicted helices that are not known on the bottom, and finally plots unpredicted helices on top in black. |
ggplot object
Lang Zhou
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