seqdiff: seqdiff
In ggmsa: Plot Multiple Sequence Alignment using 'ggplot2'
Description
Usage
Arguments
Value
Author(s)
Examples
Description
calculate difference of two aligned sequences
Usage
1
seqdiff(fasta, reference = 1)
Arguments
fasta
fasta file
reference
which sequence serve as reference, 1 or 2
Value
SeqDiff object
Author(s)
guangchuang yu
Examples
1
2
3
fas <- list.files(system.file("extdata", "GVariation", package="ggmsa"),
pattern="fas", full.names=TRUE)
seqdiff(fas[1], reference=1)
ggmsa documentation built on Aug. 3, 2021, 9:06 a.m.
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Description Usage Arguments Value Author(s) Examples
Description
calculate difference of two aligned sequences
Usage
1 | seqdiff(fasta, reference = 1)
|
Arguments
fasta |
fasta file |
reference |
which sequence serve as reference, 1 or 2 |
Value
SeqDiff object
Author(s)
guangchuang yu
Examples
1 2 3 | fas <- list.files(system.file("extdata", "GVariation", package="ggmsa"),
pattern="fas", full.names=TRUE)
seqdiff(fas[1], reference=1)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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