Description Usage Arguments Value Author(s) Examples
Sequence similarity plot
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file |
alignment fast file |
query |
query sequence |
window |
sliding window size (bp) |
step |
step size to slide the window (bp) |
group |
whether grouping sequence |
id |
position to extract id for grouping; only works if group = TRUE |
sep |
separator to split sequence name; only works if group = TRUE |
sd |
whether display standard deviation of similarity among each group; only works if group=TRUE |
ggplot object
guangchuang yu
1 2 | fas <- system.file("extdata/GVariation/sample_alignment.fa", package="ggmsa")
simplot(fas, 'CF_YL21')
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